PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.5KG659600.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | ERF | ||||||||
Protein Properties | Length: 359aa MW: 36600.8 Da PI: 5.5187 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.7 | 8.1e-20 | 136 | 185 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+W+AeIrdp + +r++lg+f tae Aa+a+++a+++++g Pavir.5KG659600.1.p 136 RYRGVRQRP-WGKWAAEIRDP-----HkaARVWLGTFETAEAAARAYDEAALRFRG 185 7********.**********7.....337************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 8.5E-33 | 136 | 194 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.1E-13 | 136 | 185 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.3E-36 | 136 | 199 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 25.686 | 136 | 193 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.01E-22 | 136 | 194 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 1.2E-11 | 137 | 148 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 7.16E-15 | 144 | 195 | No hit | No description |
PRINTS | PR00367 | 1.2E-11 | 159 | 175 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 359 aa Download sequence Send to blast |
MYFELADQRG LQRGGGGWPV KGGHDESAAA GMAMAGAGPG EVMSEYHQAR ELSTMVSALA 60 HVVAGGPWGD EAPEQQAMHG GYAREVGSYH GAPSPEFAGS EQGSDTQSAG AAAAAMEEHH 120 AAALSGQEGP ETPRRRYRGV RQRPWGKWAA EIRDPHKAAR VWLGTFETAE AAARAYDEAA 180 LRFRGSRAKL NFPEDARLHP ASTAAGAAPA PASAPLAGSA ASTSPAGAAQ GADYLMYQML 240 LQGATGNQGT LLPFYAGGGG GMSNLYGGGA GAGAMSNPYG GGGGNTSAFL GSYSFPPSSV 300 SVATVPSSAS SASGSGYYYS SPYDSHQSES SAAASDWNWE TSMLNWSDSG YPPPPHSQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 3e-23 | 137 | 193 | 6 | 63 | ATERF1 |
3gcc_A | 3e-23 | 137 | 193 | 6 | 63 | ATERF1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.18915 | 0.0 | stem |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.5KG659600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025816726.1 | 1e-135 | glycine, alanine and asparagine-rich protein-like | ||||
TrEMBL | A0A3L6RLE2 | 1e-141 | A0A3L6RLE2_PANMI; Ethylene-responsive transcription factor ABR1-like | ||||
STRING | Pavir.Ea03713.1.p | 1e-156 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6232 | 26 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G50080.1 | 3e-19 | ethylene response factor 110 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.5KG659600.1.p |