PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.5KG654100.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | C2H2 | ||||||||
Protein Properties | Length: 386aa MW: 41757.5 Da PI: 6.4587 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 17.7 | 1e-05 | 229 | 248 | 1 | 20 |
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 + C+ C+k+F+r n++ H+ Pavir.5KG654100.1.p 229 FICHVCNKTFNRYNNMQMHM 248 89*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.83E-5 | 225 | 252 | No hit | No description |
PROSITE profile | PS50157 | 10.201 | 229 | 256 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 3.0E-5 | 229 | 248 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 231 | 251 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 4.71E-5 | 297 | 333 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 386 aa Download sequence Send to blast |
MGLRACAMEG GDAVGSPFFQ WLKPPRRSSS PSSWSSSSDS SPSASMAAAS GQQVAVLGEE 60 GRTGGGAEEA SSVTCLPLLS KLGEGKGGAD DHHEQCPVKE EIAMSGASTD LAQSGVDLNI 120 GLPVGGSGIE DVVMEDKDDD EEEEGNEVEE EDDEDEGEEW KHVHGGCKVE GTADQQQHEH 180 GELAASVVEG SNNNGLGEFG VVGAENGLPI GCRYWIPTPA QILVGPVQFI CHVCNKTFNR 240 YNNMQMHMWG HGREYRKGPE SLKGTQTLAM LKLPCYCCAP GCKNNVGHPR ARPLKDFRTL 300 QTHYKRKHGA KPFRCRRCAK PFAVKGDWRT HEKNCGKRWF CACGSDFKHK RSLNDHARSF 360 GAHHRPVDDP AAAAVAGEVR RFHHI* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.5004 | 8e-57 | callus |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional regulator. {ECO:0000305|PubMed:20541552}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.5KG654100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK064334 | 0.0 | AK064334.1 Oryza sativa Japonica Group cDNA clone:002-107-G07, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025819090.1 | 0.0 | protein TRANSPARENT TESTA 1-like | ||||
Swissprot | Q8W030 | 7e-94 | ZWIP4_ARATH; Zinc finger protein WIP4 | ||||
TrEMBL | A0A3L6RIY5 | 0.0 | A0A3L6RIY5_PANMI; Uncharacterized protein | ||||
STRING | Pavir.Ea03764.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4472 | 36 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G51220.1 | 1e-92 | WIP domain protein 5 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.5KG654100.1.p |
Publications ? help Back to Top | |||
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