PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5KG648900.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family Dof
Protein Properties Length: 327aa    MW: 34768.6 Da    PI: 4.6032
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5KG648900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof119.61.1e-373388661
               zf-Dof  6 lkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61
                          +cprCds ntkfCyynnyslsqPryfCk+CrryWtkGG+lrnvPvGgg+rkn++ 
  Pavir.5KG648900.1.p 33 PNCPRCDSPNTKFCYYNNYSLSQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKNRRG 88
                         68***************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074789.0E-371587IPR003851Zinc finger, Dof-type
PfamPF027019.7E-323287IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.8543387IPR003851Zinc finger, Dof-type
PROSITE patternPS0136103571IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MLSSHHEAML PYAPRPPSLL VDRRYKQGGE ATPNCPRCDS PNTKFCYYNN YSLSQPRYFC  60
KGCRRYWTKG GSLRNVPVGG GCRKNRRGKS SVRSAAESMA SGRDAAFGHR FPGPVRPDLV  120
LEGMVGNPAN HGQGIPDVPA AADGSTIDLA MLYAKFLNNP AAEAGLGAVT PESGGQSDEA  180
FDAFSASSDL SPGGVLAPAQ QFDPCHDGFG EWSGPVSSTD PTSTASTTTT TTMLCSDVSV  240
QAALGELNFT MDQSCFDSLG LPTDVGNLSS WYSIVPSLST LEDTKYDSLD SFPDDALSLH  300
ESMVIGSDVH DYWSVDCQGL EALYMP*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.72715e-33callus
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00405DAPTransfer from AT3G52440Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5KG648900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC5824080.0KC582408.1 Sorghum bicolor dof11 protein (dof11) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025819046.10.0dof zinc finger protein DOF3.4-like
TrEMBLA0A2T7DDY70.0A0A2T7DDY7_9POAL; Uncharacterized protein
STRINGPavir.Ea03729.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26593683
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G52440.19e-38Dof family protein