PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.5KG630700.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | ERF | ||||||||
Protein Properties | Length: 259aa MW: 26619.8 Da PI: 6.2716 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 63.4 | 4.7e-20 | 114 | 164 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GVr+++ +g+W+AeIrdp + +r +lg+f+tae+Aa+a++ a+ +++g Pavir.5KG630700.1.p 114 SKYRGVRRRP-WGKWAAEIRDP-----HraARKWLGTFDTAEDAARAYDVAAVEFRG 164 89********.**********7.....338***********************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.35E-29 | 114 | 171 | No hit | No description |
SuperFamily | SSF54171 | 3.4E-23 | 114 | 173 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 9.5E-13 | 114 | 164 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.4E-31 | 115 | 173 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 6.5E-35 | 115 | 178 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 25.62 | 115 | 172 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.1E-11 | 116 | 127 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.1E-11 | 138 | 154 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 259 aa Download sequence Send to blast |
MAPRLERGGF LLPNAEQEDS LILRALISVV SGDNAVPALL PEAAPAAVAA AAPAPAVACA 60 GCGADGPCAG GCETIAAAGT GSSSDSEDDA GECSASRAAV TGGVGKRGRR RRVSKYRGVR 120 RRPWGKWAAE IRDPHRAARK WLGTFDTAED AARAYDVAAV EFRGQRAKLN FPAAQAAAAA 180 AAAPAPAPSW VPASTYHLLP PQPLPESLHE NCGSNAASPA PAPAWQQGTR SAAKEQDIWD 240 GLNEIVMMDD GSFWSSMP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 9e-21 | 115 | 172 | 14 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 105 | 122 | KRGRRRRVSKYRGVRRRP |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.5KG630700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU974975 | 9e-80 | EU974975.1 Zea mays clone 461977 ethylene-responsive element binding protein 2 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025806850.1 | 1e-130 | ethylene-responsive transcription factor ERF109-like | ||||
TrEMBL | A0A2S3GTV8 | 1e-129 | A0A2S3GTV8_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J03216.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1242 | 36 | 124 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G50080.1 | 4e-15 | ethylene response factor 110 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.5KG630700.1.p |