PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5KG613800.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 517aa    MW: 54457.6 Da    PI: 8.1719
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5KG613800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY104.94.2e-33222278259
                          --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          dDgynWrKYGqK+vkgse+prsYY+Ct+ gCp+kkkvers  d++++ei+Y+g Hnh 
  Pavir.5KG613800.1.p 222 DDGYNWRKYGQKQVKGSENPRSYYKCTFLGCPTKKKVERSL-DGQITEIVYKGAHNHA 278
                          8****************************************.***************7 PP
2WRKY1061.9e-33386444159
                          ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          ldDgy+WrKYGqK+vkg+++prsYY+Ct+agCpv+k+ver+++d ++v++tYeg+Hnh+
  Pavir.5KG613800.1.p 386 LDDGYRWRKYGQKVVKGNPNPRSYYKCTTAGCPVRKHVERASHDLRAVITTYEGKHNHD 444
                          59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.8E-28213280IPR003657WRKY domain
PROSITE profilePS5081124.157216280IPR003657WRKY domain
SuperFamilySSF1182904.05E-25217280IPR003657WRKY domain
SMARTSM007741.6E-36221279IPR003657WRKY domain
PfamPF031064.1E-25222277IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.4E-37371446IPR003657WRKY domain
SuperFamilySSF1182901.7E-29378446IPR003657WRKY domain
PROSITE profilePS5081138.687381446IPR003657WRKY domain
SMARTSM007741.2E-38386445IPR003657WRKY domain
PfamPF031068.4E-26387444IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 517 aa     Download sequence    Send to blast
MTTSSSGSIE APANSRPGSF SFASTSFTDM LGGSAAAAGG ASRYKAMTPP SLPLSPPPVS  60
PSSFFNIPGG LNPADFLDSP ALLTSSFFPS PTTNAFASQQ FSWLAPQGAE QGGGKDEQRQ  120
SYPDFSFQTA PTTEEAVRTT TTFQQPPVPP APLGEEAYRS QQQQQQQQQP WSYQQQQPGM  180
DAGSSQAAYG GPFQAAGSSD AAAMAPASCG YSQAQSQRRS SDDGYNWRKY GQKQVKGSEN  240
PRSYYKCTFL GCPTKKKVER SLDGQITEIV YKGAHNHAKP QNTRRNSSAA AAQLLQGAGE  300
AASEHSFGGT PVATPENSSA SFGDDEAGGA GSPRAGIAGG DEFDEDEPDS KRWRKDGDGD  360
GISMAGNRTV REPRVVVQTM SDIDILDDGY RWRKYGQKVV KGNPNPRSYY KCTTAGCPVR  420
KHVERASHDL RAVITTYEGK HNHDVPAARG SAALYRPAPP PADTYLAAAP GVRPPAPMAA  480
YQTGQQYGFG GPSSFGGAAA AASGSPPAST TRWGRT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-36213447878Probable WRKY transcription factor 4
2lex_A3e-36213447878Probable WRKY transcription factor 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.4318e-70root| stem
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: In dry seeds, expressed in aleurone cells and embryos. Levels drop rapidly but transiently in the embryos of imbibed seeds. {ECO:0000250|UniProtKB:Q6IEQ7}.
UniprotTISSUE SPECIFICITY: Expressed in aleurone cells. Mostly expressed in aleurone layers and leaves, and, to a lower extent, in roots, panicles and embryos. {ECO:0000250|UniProtKB:Q6IEQ7}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor (By similarity). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Negative regulator of both gibberellic acid (GA) and abscisic acid (ABA) signaling in aleurone cells, probably by interfering with GAM1, via the specific repression of GA- and ABA-induced promoters (By similarity). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000250|UniProtKB:Q6QHD1}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5KG613800.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in aleurone cells, embryos, roots and leaves (PubMed:25110688). Slightly down-regulated by gibberellic acid (GA) (By similarity). Accumulates in response to jasmonic acid (MeJA) (PubMed:16919842). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000269|PubMed:16919842, ECO:0000269|PubMed:25110688}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0539940.0BT053994.1 Zea mays full-length cDNA clone ZM_BFc0103O21 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025819311.10.0WRKY transcription factor WRKY24-like
SwissprotQ6B6R40.0WRK24_ORYSI; WRKY transcription factor WRKY24
TrEMBLA0A2T7DF080.0A0A2T7DF08_9POAL; Uncharacterized protein
STRINGPavir.Ea03280.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29923687
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38470.11e-96WRKY DNA-binding protein 33
Publications ? help Back to Top
  1. Basu S,Roychoudhury A
    Expression profiling of abiotic stress-inducible genes in response to multiple stresses in rice (Oryza sativa L.) varieties with contrasting level of stress tolerance.
    Biomed Res Int, 2014. 2014: p. 706890
    [PMID:25110688]