PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.5KG543000.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | ARF | ||||||||
Protein Properties | Length: 683aa MW: 74334.8 Da PI: 7.1377 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 78.3 | 8.3e-25 | 128 | 229 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 f+k+lt sd++++g +++p++ ae++ ++ + s++l+ +d++g +W++++iyr++++r++lt+GW++Fv+ ++L +gD v+F Pavir.5KG543000.1.p 128 FCKTLTASDTSTHGGFSVPRRAAEDCfppldynQLRP--SQELVAKDLHGAKWKFRHIYRGQPRRHLLTTGWSSFVNKKKLVSGDAVLFL 215 99****************************9876665..459************************************************ PP E-SSSEE..EEEEE-S CS B3 84 ldgrsefelvvkvfrk 99 + +++el+++v+r+ Pavir.5KG543000.1.p 216 --RGDDGELRLGVRRA 229 ..3489999***9996 PP | |||||||
2 | Auxin_resp | 90.6 | 2.7e-30 | 256 | 334 | 3 | 82 |
Auxin_resp 3 haastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 ++++++svF++ YnPra++se++++++k+ k+l+++ ++G R+ ++ ++ed+serr sG+vvg+ ++dp++Wp+SkW+sL Pavir.5KG543000.1.p 256 DSLKHRSVFHISYNPRAAASEYIIPYRKFFKSLNHQTCIGARINFQCQNEDVSERR-SGMVVGIGEVDPMKWPGSKWKSL 334 67899***************************************************.9********************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 2.62E-45 | 113 | 266 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 3.4E-39 | 123 | 231 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.00E-22 | 126 | 228 | No hit | No description |
PROSITE profile | PS50863 | 13.479 | 128 | 230 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 9.6E-23 | 128 | 229 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.2E-24 | 128 | 230 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 2.9E-25 | 257 | 334 | IPR010525 | Auxin response factor |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 683 aa Download sequence Send to blast |
MGIDLNMVDG EGEERRHPPA VCRDLWHACA GPVVALPRRG SLVVYLPQGH IAAAGGGDVA 60 ADLPPHVVCR VADIELCADA ATDEVYARLA LVAEGEAFGR NVRGGGVEGD EDMEDFDAER 120 KSRMLHMFCK TLTASDTSTH GGFSVPRRAA EDCFPPLDYN QLRPSQELVA KDLHGAKWKF 180 RHIYRGQPRR HLLTTGWSSF VNKKKLVSGD AVLFLRGDDG ELRLGVRRAV QLKNEALFEE 240 FSSDSAKRHT LSAVYDSLKH RSVFHISYNP RAAASEYIIP YRKFFKSLNH QTCIGARINF 300 QCQNEDVSER RSGMVVGIGE VDPMKWPGSK WKSLLVRWED GSECNGQDRV SPWEIDIVGG 360 SVSAAHSLSA SSSKRTKLCP PGNLDVPTMW NGCTDSVETG KLPRVLQGQE LMGFRTHRVT 420 CAPQTAEVAK FQSSDASRFL TNARSCMLSG PTGRLAVQNS GFTYQSVGFN ESIGFSEVLQ 480 GQEISQAVPM FQGMMSEACS LKGGYGLHGY MHTPAAVNGL SATAQECSLT LSTPPAAQVP 540 PPHPNHMFNQ TLSSQLGLGN KAAREGANGS QPRPFDMSWE AQTRPQHETP AQISLDQFEA 600 RRTSAPGDAA KIGSGGREVR KTSCRLFGFS LTEKILPADD DGVKEVSYEA ECQNPRMLDL 660 FGYNRSTPNA ALPALCAAPF GM* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldy_A | 9e-94 | 20 | 356 | 18 | 353 | Auxin response factor 1 |
4ldy_B | 9e-94 | 20 | 356 | 18 | 353 | Auxin response factor 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.18485 | 0.0 | callus| leaf| stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.5KG543000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT066442 | 0.0 | BT066442.1 Zea mays full-length cDNA clone ZM_BFc0182A22 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025816252.1 | 0.0 | auxin response factor 3-like isoform X2 | ||||
Swissprot | Q5JMM1 | 0.0 | ARFC_ORYSJ; Auxin response factor 3 | ||||
TrEMBL | A0A2T8IK25 | 0.0 | A0A2T8IK25_9POAL; Auxin response factor | ||||
STRING | Pavir.J17853.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5113 | 27 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33860.1 | 1e-142 | ARF family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.5KG543000.1.p |
Publications ? help Back to Top | |||
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