PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5KG516000.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family B3
Protein Properties Length: 426aa    MW: 47240.1 Da    PI: 10.5489
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5KG516000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B364.41.7e-2019118198
                          EEEE-..-HHHHTT-EE--HHH.HTT.........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvv 81 
                          ffkvl   +   ++rl +p +f++++           +ke s+  tle +sgr+W v +  r++ +++++t+GW +Fv+++ L+e +f+v
  Pavir.5KG516000.1.p  19 FFKVL---MGDFKKRLKIPPDFCKHIpweasrkkaRAVKEASMAATLEGPSGRTWLVVI--RRTAEGTFFTSGWPKFVQDQALRELEFLV 103
                          66777...4455668********888*****999988899*******************..***************************** PP

                          EEE-SSSEE..EEEEE- CS
                   B3  82 Fkldgrsefelvvkvfr 98 
                          F++dg+++f    +vf+
  Pavir.5KG516000.1.p 104 FRYDGDTRF--AAMVFD 118
                          ****99888..666665 PP
2B348.81.3e-15320406598
                          -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
                   B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                          +++ +v  s ++++p  f ++h   ++e ++++l+ + g+ W v +i  ++++r  l++GW  F++ n L+egD +vF+l+g  ef  +v
  Pavir.5KG516000.1.p 320 MSTMHVYYSFMMRFPTGFSRQHL--PRERTDVVLRVPGGKAWVVLYI-PNTRDR--LSRGWCAFARGNCLEEGDYCVFELVGAAEF--RV 402
                          6788999999*********9995..345679***************4.444455..9***********************997777..99 PP

                          EEE- CS
                   B3  95 kvfr 98 
                          +vfr
  Pavir.5KG516000.1.p 403 HVFR 406
                          9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.8E-2014122IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.08E-2015122IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.8316120IPR003340B3 DNA binding domain
CDDcd100171.16E-1717118No hitNo description
PfamPF023627.2E-1819116IPR003340B3 DNA binding domain
SMARTSM010198.3E-1219120IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.5E-20309406IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.33E-22310406IPR015300DNA-binding pseudobarrel domain
CDDcd100172.19E-23314406No hitNo description
PROSITE profilePS5086313.324316408IPR003340B3 DNA binding domain
SMARTSM010197.0E-10316408IPR003340B3 DNA binding domain
PfamPF023622.4E-14318406IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 426 aa     Download sequence    Send to blast
MPAAGRLSPW ATGERRPHFF KVLMGDFKKR LKIPPDFCKH IPWEASRKKA RAVKEASMAA  60
TLEGPSGRTW LVVIRRTAEG TFFTSGWPKF VQDQALRELE FLVFRYDGDT RFAAMVFDTS  120
ACEREDLLLG GGGGDPRRGR RGTKRGRATT TGGPSREAAK PKRARKDSVG KELVPYRGAT  180
TAGDRQLQVA CSNRTPESAA GAVKTEMEDA DELALCVVIP APPPPQQDDP APTRRRRGPQ  240
PQDPGAETTR RAVKTRSIHE DLQAAAAPAL AADDADIPAS VRRYRGYVSR RRPATGAERQ  300
LAMELAYAFR SPLPYCVIRM STMHVYYSFM MRFPTGFSRQ HLPRERTDVV LRVPGGKAWV  360
VLYIPNTRDR LSRGWCAFAR GNCLEEGDYC VFELVGAAEF RVHVFRVVDP PVPAVRLRSA  420
ASDPI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5KG516000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0032298e-97AP003229.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0022F10.
GenBankAP0149578e-97AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankCP0126098e-97CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025814249.10.0B3 domain-containing protein Os01g0723500-like
SwissprotQ8S2E60.0Y1235_ORYSJ; B3 domain-containing protein Os01g0723500
TrEMBLA0A3L6SU880.0A0A3L6SU88_PANMI; B3 domain-containing protein
STRINGPavir.Ea02697.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP127923135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.18e-13B3 family protein