PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5KG452200.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB
Protein Properties Length: 273aa    MW: 29135.3 Da    PI: 6.7798
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5KG452200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.97.2e-162269148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g+WT eEd +lv ++ ++G g+W+  ar  g++R +k+c++rw++yl
  Pavir.5KG452200.1.p 22 KGPWTLEEDIILVGYISEHGEGSWDNLARAAGLNRNGKSCRLRWLNYL 69
                         79********************************************97 PP
2Myb_DNA-binding45.71.5e-1479118546
                          -HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          T+ Ed  + ++++ lG++ W++I+++++ gRt++++k++w++
  Pavir.5KG452200.1.p  79 TPAEDAAIRELHAALGNR-WSKISKHLP-GRTDNEIKNYWRT 118
                          999***************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129423.1391773IPR017930Myb domain
SuperFamilySSF466895.31E-3020116IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.5E-192068IPR009057Homeodomain-like
SMARTSM007171.4E-122171IPR001005SANT/Myb domain
PfamPF002495.4E-142269IPR001005SANT/Myb domain
CDDcd001676.58E-102469No hitNo description
Gene3DG3DSA:1.10.10.601.5E-2269123IPR009057Homeodomain-like
PROSITE profilePS5129416.49674124IPR017930Myb domain
SMARTSM007178.9E-1374122IPR001005SANT/Myb domain
PfamPF002494.4E-1379118IPR001005SANT/Myb domain
CDDcd001679.76E-1279118No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MATCTVGMST RGRGGDQPAV RKGPWTLEED IILVGYISEH GEGSWDNLAR AAGLNRNGKS  60
CRLRWLNYLR PGVRLGGITP AEDAAIRELH AALGNRWSKI SKHLPGRTDN EIKNYWRTRI  120
QKKPAAAPKA TTTTPPRQQT PAVSEGASSA AGDYYWCSTK PDPDQEAAYY YQKAAMAAAA  180
PTAAAAAVSG EGGASTALTG QDSPTAGDWH VQQSSCCPDY SELMSSAAAG HGETAVGVDA  240
LTPLHWFSSQ FSDTFWNAVE NFWETKPVAD AF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-24181233107B-MYB
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Mainly expressed in floral tissues. expressed in all four whorls of the flower, in the anther vascular tissue and in cells at the junction between anther and stamen filaments. Detected in the nectaries and ovules. {ECO:0000269|PubMed:16805732, ECO:0000269|PubMed:19325888, ECO:0000269|Ref.1}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in photomorphogenesis in the light. May act downstream of the light receptor network and directly affects transcription of light-induced genes. In darkness, its probable degradation prevent the activation of light-induced genes. Required to activate expression of PAL. Acts redundantly with MYB24 and MYB57 to control stamen filament elongation in the late developed flowers. Contributes with MYB24 to induction of MYB108 by jasmonate. Repressed at the transcript levels by DELLA proteins. {ECO:0000269|PubMed:11967090, ECO:0000269|PubMed:16805732, ECO:0000269|PubMed:19091873, ECO:0000269|PubMed:19325888, ECO:0000269|PubMed:21447791}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5KG452200.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by jasmonate. {ECO:0000269|PubMed:16805732}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7281931e-123KJ728193.1 Zea mays clone pUT6467 MYB transcription factor (MYB53) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025815397.11e-152transcription factor MYB57-like
SwissprotQ9LK954e-58MYB21_ARATH; Transcription factor MYB21
TrEMBLA0A2T7DJA71e-152A0A2T7DJA7_9POAL; Uncharacterized protein
STRINGPavir.J05460.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP132402633
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27810.12e-54myb domain protein 21
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Su Z, et al.
    Flower development under drought stress: morphological and transcriptomic analyses reveal acute responses and long-term acclimation in Arabidopsis.
    Plant Cell, 2013. 25(10): p. 3785-807
    [PMID:24179129]
  3. Liu Z, et al.
    A Conserved Cytochrome P450 Evolved in Seed Plants Regulates Flower Maturation.
    Mol Plant, 2015. 8(12): p. 1751-65
    [PMID:26388305]
  4. Chen X,Huang H,Qi T,Liu B,Song S
    New perspective of the bHLH-MYB complex in jasmonate-regulated plant fertility in arabidopsis.
    Plant Signal Behav, 2016. 11(2): p. e1135280
    [PMID:26829586]
  5. Huang H, et al.
    Arabidopsis MYB24 Regulates Jasmonate-Mediated Stamen Development.
    Front Plant Sci, 2017. 8: p. 1525
    [PMID:28928760]