PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pavir.5KG452000.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 262aa MW: 27850.5 Da PI: 6.7185 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.4 | 5.3e-16 | 13 | 60 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT eEd+ lv ++ q+G g+W+ ar g++R +k+c++rw++yl Pavir.5KG452000.1.p 13 KGPWTLEEDLVLVGYISQHGEGSWDNLARAAGLNRNGKSCRLRWLNYL 60 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 46.5 | 8.4e-15 | 67 | 109 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g T+ Ed + ++++ lG++ W++Ia++++ gRt++++k++w++ Pavir.5KG452000.1.p 67 GGITPAEDAAIRELHAALGNK-WSKIAAHLP-GRTDNEIKNYWRT 109 5669*****************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.3E-19 | 8 | 63 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 23.136 | 8 | 64 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.62E-30 | 11 | 107 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.9E-12 | 12 | 62 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.4E-13 | 13 | 60 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.37E-9 | 15 | 60 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 4.4E-24 | 64 | 113 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 18.335 | 65 | 115 | IPR017930 | Myb domain |
SMART | SM00717 | 1.6E-13 | 65 | 113 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.2E-13 | 67 | 109 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.08E-11 | 70 | 109 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 262 aa Download sequence Send to blast |
MGRTCGGEPA VRKGPWTLEE DLVLVGYISQ HGEGSWDNLA RAAGLNRNGK SCRLRWLNYL 60 RPGVRRGGIT PAEDAAIREL HAALGNKWSK IAAHLPGRTD NEIKNYWRTR IQRRPAAPAS 120 SAQQPYRAPA TATATAAAMT ASEGASSSSS AAASHGSSAD WWYVEPVNHP EQGAHCSQSV 180 AAAAAGVDSG SASSALTSRD SSTTAGVDGQ HMQTSYGDRY YYSELSSAAA ADGVEMVDAG 240 SFWNVDDDFW GRFQMLHYPD S* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 8e-26 | 7 | 114 | 1 | 107 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Pavir.5KG452000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | KJ728193 | 1e-118 | KJ728193.1 Zea mays clone pUT6467 MYB transcription factor (MYB53) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025815399.1 | 1e-116 | myb-related protein 340-like | ||||
TrEMBL | A0A3L6QZT6 | 1e-119 | A0A3L6QZT6_PANMI; Uncharacterized protein | ||||
STRING | Pavir.J35999.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13240 | 26 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G27810.1 | 2e-53 | myb domain protein 21 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Pavir.5KG452000.1.p |