PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.5KG445000.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | C3H | ||||||||
Protein Properties | Length: 345aa MW: 37010.9 Da PI: 8.346 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 47.3 | 3.2e-15 | 269 | 294 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +ktelC+ + +tG C+yG++C+FaHg Pavir.5KG445000.1.p 269 FKTELCNKWEETGACPYGEQCQFAHG 294 79***********************9 PP | |||||||
2 | zf-CCCH | 17.5 | 7.3e-06 | 307 | 332 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ykt Cr +++ C+yG rC+F H+ Pavir.5KG445000.1.p 307 YKTQVCRMVLAGEVCPYGHRCHFRHS 332 99*********66**********998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1000.10 | 4.9E-18 | 265 | 301 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.14E-10 | 266 | 300 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.356 | 268 | 296 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.9E-9 | 268 | 295 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.8E-12 | 269 | 294 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 9.6E-12 | 302 | 332 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.14E-8 | 302 | 335 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.535 | 306 | 334 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 4.5E-5 | 306 | 333 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 345 aa Download sequence Send to blast |
MQEALLSPGN AGSLRSALEL KPFAFGDQRL ASPRYLNLAC GGGGDDAVDA LFRCSSPFSP 60 SFGFSSPSPL AASSSVSLSP SSSASLVDDC DDAAADAATG HRLQLARLAL QYQEAADRYE 120 LCLARLAEAA DEAAALRREN AELRAANGDL TRRLALLRDI GKQAAAAAIA DEVRRLRFVD 180 QKAAKERPPE KLAVLPKSIS VRSNEYLKMK LPNQAPATPA ANNSKPRAAN ATKPSSQRAY 240 MGDGGGRKGE EATKEAGGTE LEVCNQGMFK TELCNKWEET GACPYGEQCQ FAHGVAELRP 300 VIRHPRYKTQ VCRMVLAGEV CPYGHRCHFR HSLTQAERLL LPRP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1rgo_A | 8e-23 | 269 | 332 | 4 | 67 | Butyrate response factor 2 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.5KG445000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT042147 | 0.0 | BT042147.1 Zea mays full-length cDNA clone ZM_BFb0146F09 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004969302.1 | 1e-167 | zinc finger CCCH domain-containing protein 9 isoform X1 | ||||
Swissprot | A2ZVY5 | 1e-114 | C3H9_ORYSJ; Zinc finger CCCH domain-containing protein 9 | ||||
TrEMBL | K3XJH7 | 1e-166 | K3XJH7_SETIT; Uncharacterized protein | ||||
STRING | Pavir.Ea02238.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2775 | 37 | 84 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68200.1 | 6e-48 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.5KG445000.1.p |