PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5KG427100.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 315aa    MW: 32743.4 Da    PI: 6.4115
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5KG427100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY81.86.9e-26129190159
                          ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                          ldDg +WrKYGqK++ g+++pr+Y+rCt++   +C++ k+v+r++ dp +++++Y+g+H++ 
  Pavir.5KG427100.1.p 129 LDDGLSWRKYGQKDILGAKYPRAYFRCTHRrtqSCNASKQVQRTDGDPLLFDVVYHGSHTCA 190
                          58***************************99999**************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.7E-27114191IPR003657WRKY domain
SuperFamilySSF1182901.57E-24123191IPR003657WRKY domain
PROSITE profilePS5081120.472124187IPR003657WRKY domain
SMARTSM007742.5E-37129191IPR003657WRKY domain
PfamPF031062.3E-24130189IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MEGMSEDKCA LVAELVRVLE MVRQLEAHTA GQQGGAAAGG EQRCRALVCT MRDSIDRAVH  60
MAMSCCAAGG QPESPPSGGD GGSPRSAGSD QAGDFRGRGN AAGQCKKRKT LPKRSTQVRV  120
SAVQDVTPLD DGLSWRKYGQ KDILGAKYPR AYFRCTHRRT QSCNASKQVQ RTDGDPLLFD  180
VVYHGSHTCA QAQHQGAAAA HPGGGNQGAQ TASPGLLEAA AGPVLPFSLP SNAPAAGADD  240
AGGSRLPGGG AGARATASPF VSPATTPECL AREDVPHHDA ELDSTTNSPM TMAEMDFMFP  300
LDTADFLENP DSYF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A3e-21126189568OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5KG427100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025817578.11e-168probable WRKY transcription factor 41
TrEMBLA0A3L6SIL21e-174A0A3L6SIL2_PANMI; Putative WRKY transcription factor 53
STRINGPavir.Ea02282.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33553183
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.23e-34WRKY family protein