PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5KG370500.3.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 496aa    MW: 55844.5 Da    PI: 6.6753
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5KG370500.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM141.54.9e-443274551127
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 
                          lppGfrF+Ptdeel+v+yL+k++++k++++  +++e+diy+++PwdLp k v+++e  wyfFs++ +ky +++r+ ra+ sgyW+  g+d
  Pavir.5KG370500.3.p 327 LPPGFRFQPTDEELIVHYLCKRAAAKPCPI-PIVAELDIYQFDPWDLPaKGVNGGEGVWYFFSPSTHKYGNSSRPCRAAGSGYWNVVGTD 415
                          79****************************.88***************678888888********************************* PP

                  NAM  90 kevlsk..kgelvglkktLvfykgrapkgektdWvmheyr 127
                          k+++s+  +ge+ g+ ktLvfy+gr p+g+kt+W+m+eyr
  Pavir.5KG370500.3.p 416 KDIFSStaDGEVLGMYKTLVFYRGRWPRGQKTTWFMKEYR 455
                          ****99889999***************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF078876.2E-41174323IPR012416CALMODULIN-BINDING PROTEIN60
SuperFamilySSF1019411.05E-51326485IPR003441NAC domain
PROSITE profilePS5100551.105327485IPR003441NAC domain
PfamPF023651.6E-21328455IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006950Biological Processresponse to stress
GO:0003677Molecular FunctionDNA binding
GO:0005516Molecular Functioncalmodulin binding
Sequence ? help Back to Top
Protein Sequence    Length: 496 aa     Download sequence    Send to blast
MVVSPTEERV LEGLSNPFFV RGHDRPNRQA IDEMLASYDF TDQNAMGNNF LGAPGNNGLL  60
SSALVGIGTG QNFMGDDHVP FHAIGTEFNT NQTALPVHLI LDTPNVELRK RRWDLLEQLM  120
PLYSCQHKSI KSVLPTMRLM SEKTPRRGGV LIEPLEPDDS DERRPLKRMM HNKYRLRFVN  180
KVCETYYTRE QIKAYDGNHL KVALFDENNT RITYGPLSSA SVEVVALHGD FSVDGDQDYW  240
TWDEFSRGIV CPRPGKEGSV LGGDLILALD DGEACLADAF FQVTSFVART GKFKMGVKML  300
ASGRQDERIQ EGISEAFWVK DRRVGDLPPG FRFQPTDEEL IVHYLCKRAA AKPCPIPIVA  360
ELDIYQFDPW DLPAKGVNGG EGVWYFFSPS THKYGNSSRP CRAAGSGYWN VVGTDKDIFS  420
STADGEVLGM YKTLVFYRGR WPRGQKTTWF MKEYRRLPAD GTKVSPSTSS MMLDESRVLC  480
KIFQKTDQLP PVQFM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A8e-4932648814171Stress-induced transcription factor NAC1
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5KG370500.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015694641.11e-126PREDICTED: uncharacterized protein LOC107304550
STRINGPavir.J04622.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69490.11e-50NAC-like, activated by AP3/PI