PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5KG351100.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB_related
Protein Properties Length: 291aa    MW: 30396.2 Da    PI: 8.4911
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5KG351100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding39.99.8e-13135179347
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          +WT+eE+ l++ +  ++G+g+W++I+r +   Rt+ q+ s+ qky
  Pavir.5KG351100.1.p 135 PWTEEEHRLFLLGLDKFGKGDWRSISRNFVMSRTPTQVASHAQKY 179
                          7*****************************99************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.08765IPR001005SANT/Myb domain
CDDcd001672.49E-41063No hitNo description
PROSITE profilePS500905.7841163IPR017877Myb-like domain
SuperFamilySSF466892.08E-51169IPR009057Homeodomain-like
PROSITE profilePS5129416.561128184IPR017930Myb domain
SuperFamilySSF466895.31E-17130185IPR009057Homeodomain-like
TIGRFAMsTIGR015575.8E-17132182IPR006447Myb domain, plants
SMARTSM007172.5E-10132182IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.7E-11133178IPR009057Homeodomain-like
CDDcd001679.18E-10135180No hitNo description
PfamPF002497.0E-11135179IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MTNLATTAAA WTREEDKAFE NAVAATAAPP GDGPPDDGWF TALAASVPAR TAEEVRRHYE  60
ALLEDVASIE AGRVPLPRYA GEESAAAAPD SAAGAASTPK DGGGGGGHRR EERKSGVDVG  120
KSCSKAEQER RKGIPWTEEE HRLFLLGLDK FGKGDWRSIS RNFVMSRTPT QVASHAQKYF  180
IRLNSMNRDR RRSSIHDITS VTAGEVAAAG APITGGPAAA GAMPMGPAGM KHHHPPGPPM  240
GMYGHAPMGH PVAGHMVAPA AVGTPVMFPP GHSPYVVPVG YPAPPAKMHQ *
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in aboveground tissues, with the highest level in leaves. {ECO:0000269|PubMed:12172034}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to 5'-TATCCA-3' elements in gene promoters. Derepresses strongly the sugar-repressed transcription of promoters containing SRS or 5'-TATCCA-3' elements. Functions with GAMYB to integrate diverse nutrient starvation and gibberellin (GA) signaling pathways during germination of grains. Sugar, nitrogen and phosphate starvation signals converge and interconnect with GA to promote the co-nuclear import of MYBS1 and GAMYB, resulting in the expression of a large set of GA-inducible hydrolases, transporters, and regulators that are essential for mobilization of nutrient reserves in the endosperm to support seedling growth (PubMed:22773748). {ECO:0000269|PubMed:12172034, ECO:0000269|PubMed:22773748}.
UniProtTranscription activator that binds to 5'-TATCCA-3' elements in gene promoters. Derepress strongly the sugar-repressed transcription of promoters containing SRS or 5'-TATCCA-3' elements. {ECO:0000250|UniProtKB:Q8LH59}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5KG351100.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by sucrose and gibberellic acid (GA). {ECO:0000269|PubMed:12172034}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0553330.0BT055333.2 Zea mays full-length cDNA clone ZM_BFb0024K03 mRNA, complete cds.
GenBankKJ7275370.0KJ727537.1 Zea mays clone pUT5397 MYB-related transcription factor (MYBR76) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025819847.11e-178transcription factor MYBS1-like
SwissprotB8A9B21e-126MYBS1_ORYSI; Transcription factor MYBS1
SwissprotQ8LH591e-126MYBS1_ORYSJ; Transcription factor MYBS1
TrEMBLA0A2S3HVA11e-176A0A2S3HVA1_9POAL; Uncharacterized protein
TrEMBLA0A3L6R3I31e-176A0A3L6R3I3_PANMI; Uncharacterized protein
STRINGPavir.Ea01767.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP94663041
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49010.12e-53MYB family protein
Publications ? help Back to Top
  1. Hong YF, et al.
    Convergent starvation signals and hormone crosstalk in regulating nutrient mobilization upon germination in cereals.
    Plant Cell, 2012. 24(7): p. 2857-73
    [PMID:22773748]