PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.5KG336000.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

BBR-BPC

Protein Properties

Length: 291aa MW: 32006.1 Da PI: 9.9073

Description

BBR-BPC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.5KG336000.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GAGA_bind	365.3	1.2e-111	1	290	32	301
GAGA_bind 32 iaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllvensla...salpvgvqv...lsgtksidslqqls 115 ++e+d++irer++al+ekkaa+aerdmaf+qrd+a+aern+a+verdn+l+al+l++++ + +++ ++ l+gtk+i++++qls Pavir.5KG336000.1.p 1 MNEKDSAIRERDHALAEKKAAIAERDMAFAQRDAAMAERNAAIVERDNALAALELARTNGFntnNGNGFHQHQgppLHGTKNIHHHDQLS 90 689************************************************99888766555233332222223789*****99 PP GAGA_bind 116 e.....pqledsave.lreeeklealpieeaaeeakekkkkkkrqrakkpkekkak..kkkkksekskkkvkkesader......skaek 191 + ql+ds+++ +re++++ea+pi +a+ + + kk++k++++++p+++ + +k+kk ++++k+ +++ e+ +k+e+ Pavir.5KG336000.1.p 91 HvqsspLQLADSPYDhAREMHISEAYPIATAPGCIGKGKKPRKNNTQASPLKRPSGvlRKTKKAASEWKNRGMSGGGEDstrasvMKNEW 180 9899999****9*********************************999776667777888888777655334678889 PP GAGA_bind 192 ksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsn 281 k++dl+ln+v +Dest+P+P+CsCtG lrqCYkWGnGGWqS+CCt+++S+yPLPv+++rr+aR++grKmS++af+klL++LaaeG+dls+ Pavir.5KG336000.1.p 181 KDQDLGLNQVPFDESTMPAPACSCTGELRQCYKWGNGGWQSSCCTMSMSMYPLPVMPNRRHARMGGRKMSGSAFTKLLSRLAAEGHDLST 270 ************************************************************************************** PP GAGA_bind 282 pvDLkdhWAkHGtnkfvtir 301 pvDLkdhWAkHGtn+++tir Pavir.5KG336000.1.p 271 PVDLKDHWAKHGTNRYITIR 290 *****************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01226	6.4E-139	1	290	IPR010409	GAGA-binding transcriptional activator
Pfam	PF06217	9.4E-92	1	290	IPR010409	GAGA-binding transcriptional activator

Sequence ? help Back to Top
Protein Sequence Length: 291 aa Download sequence Send to blast
MNEKDSAIRE RDHALAEKKA AIAERDMAFA QRDAAMAERN AAIVERDNAL AALELARTNG 60 FNTNNGNGFH QHQGPPLHGT KNIHHHDQLS HVQSSPLQLA DSPYDHAREM HISEAYPIAT 120 APGCIGKGKK PRKNNTQASP LKRPSGVLRK TKKAASEWKN RGMSGGGEDS TRASVMKNEW 180 KDQDLGLNQV PFDESTMPAP ACSCTGELRQ CYKWGNGGWQ SSCCTMSMSM YPLPVMPNRR 240 HARMGGRKMS GSAFTKLLSR LAAEGHDLST PVDLKDHWAK HGTNRYITIR *

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pvr.17136	1e-167	leaf\| stem

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.5KG336000.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF184759	0.0	KF184759.1 Saccharum hybrid cultivar R570 clone BAC 015H09 complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025811522.1	0.0	barley B recombinant-like protein D
Refseq	XP_025811523.1	0.0	barley B recombinant-like protein D
Refseq	XP_025811524.1	0.0	barley B recombinant-like protein D
Swissprot	Q5VSA8	1e-179	BBRD_ORYSJ; Barley B recombinant-like protein D
TrEMBL	A0A3L6S1D2	0.0	A0A3L6S1D2_PANMI; BBR/BPC transcription factor
STRING	Pavir.J00934.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6226	37	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G42520.2	1e-93	basic pentacysteine 6

Link Out ? help Back to Top
Phytozome	Pavir.5KG336000.1.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]