PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.5KG230300.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | GATA | ||||||||
Protein Properties | Length: 207aa MW: 22287.3 Da PI: 10.8992 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 60.7 | 1.8e-19 | 99 | 133 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C+ C++t+Tp+WR+gp g+++LCnaCG++yrkk++ Pavir.5KG230300.1.p 99 CVECRATTTPMWRSGPTGPRSLCNACGIRYRKKRR 133 ********************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50114 | 12.941 | 93 | 129 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 3.0E-13 | 93 | 151 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 7.6E-13 | 95 | 134 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 2.3E-15 | 98 | 134 | IPR013088 | Zinc finger, NHR/GATA-type |
PROSITE pattern | PS00344 | 0 | 99 | 124 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 3.3E-17 | 99 | 133 | IPR000679 | Zinc finger, GATA-type |
CDD | cd00202 | 9.79E-13 | 99 | 134 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 207 aa Download sequence Send to blast |
MRRPLFPSNP SEIIHFSTPP LPFSATTLYY TLPKNRAAQR GRDRTRNQIS PSDPPPVADP 60 ATDRVRACPL LPPAPAPMGS ADRSEIDGVA VAGRGARGCV ECRATTTPMW RSGPTGPRSL 120 CNACGIRYRK KRRQELGLDH KQHQQLRQQH NGEAKTEVKD SSSSSGGGGS SNLQAVQKRR 180 LLMGVEEAAL LLMTLSSSPT STLLHG* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.2794 | 0.0 | callus| root |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.5KG230300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025814363.1 | 9e-69 | GATA transcription factor 23-like | ||||
TrEMBL | A0A2T7DM74 | 2e-85 | A0A2T7DM74_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ea01306.1.p | 1e-149 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6721 | 28 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G26930.1 | 2e-17 | GATA transcription factor 23 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.5KG230300.1.p |