PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.5KG201800.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | G2-like | ||||||||
Protein Properties | Length: 220aa MW: 23040.8 Da PI: 9.7802 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 73.9 | 2.2e-23 | 103 | 158 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsek.AtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r++W++eLH+ F++a + LG + A+Pk+il lm+v+g+t+e+v+SHLQkYRl Pavir.5KG201800.1.p 103 KARVVWSEELHDMFLKAYNILGEVSRdAVPKKILALMNVDGITRENVASHLQKYRL 158 68*******************986544****************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 10.32 | 100 | 161 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.6E-24 | 101 | 162 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 9.86E-18 | 102 | 162 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.9E-22 | 103 | 158 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 3.3E-6 | 105 | 157 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 220 aa Download sequence Send to blast |
MTPHAPARPP EATGGDGSGG SAVEAAAQSK PRKRKKPRPP PQPPSSSMEE AAQSKPAKRK 60 KKVASSSAPA GPATPSPPSG GDGTGSGDGQ QLAAGDGQQQ RGKARVVWSE ELHDMFLKAY 120 NILGEVSRDA VPKKILALMN VDGITRENVA SHLQKYRLSL KQEEKRIPEP DNEGELEASS 180 SQTPLPTTPP QAQAQEPAPS SLHTTILPPP LLENGTLVPV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 2e-17 | 103 | 162 | 5 | 62 | ARR10-B |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 29 | 37 | KPRKRKKPR |
2 | 30 | 36 | PRKRKKP |
3 | 31 | 35 | RKRKK |
4 | 31 | 37 | RKRKKPR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.5KG201800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025819305.1 | 4e-75 | probable transcription factor GLK2 | ||||
TrEMBL | A0A2T7DN52 | 5e-78 | A0A2T7DN52_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Eb01200.1.p | 2e-63 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP20969 | 5 | 6 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G58080.1 | 4e-18 | response regulator 18 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.5KG201800.1.p |