PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5KG188900.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB
Protein Properties Length: 306aa    MW: 33116.7 Da    PI: 6.0369
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5KG188900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.91.7e-163986148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         rg+WT+eEd ll+ +v+ +G g+W+  a   g++Rt+k+c++rw++yl
  Pavir.5KG188900.1.p 39 RGPWTAEEDALLAGYVAAHGEGRWNELALAAGLRRTGKSCRLRWLNYL 86
                         89********************************************97 PP
2Myb_DNA-binding50.83.9e-1692135146
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          rg +T+ E++l++d++ ++G++ W++Ia++++ gRt++++k++w++
  Pavir.5KG188900.1.p  92 RGGFTPREQLLILDLHSRWGNR-WSKIAAHLP-GRTDNEVKNYWRT 135
                          788*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129422.6323490IPR017930Myb domain
SuperFamilySSF466892.32E-3037133IPR009057Homeodomain-like
SMARTSM007173.8E-133888IPR001005SANT/Myb domain
PfamPF002492.4E-153986IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.2E-214093IPR009057Homeodomain-like
CDDcd001672.03E-104186No hitNo description
PROSITE profilePS5129417.0891141IPR017930Myb domain
SMARTSM007172.7E-1491139IPR001005SANT/Myb domain
PfamPF002497.9E-1592135IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.1E-2394140IPR009057Homeodomain-like
CDDcd001677.84E-1295135No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MEMEALWTSS PCGGMIRLPS PAAGVGEDEA AAAAAELRRG PWTAEEDALL AGYVAAHGEG  60
RWNELALAAG LRRTGKSCRL RWLNYLRPGV RRGGFTPREQ LLILDLHSRW GNRWSKIAAH  120
LPGRTDNEVK NYWRTRVQKH AKQLGCDVGS GRFHDAMRNL WMPRLLERIH ADESAAAGDV  180
SHYYSAASPA QHAPTSQPAY QNAAASAPII SNCARATSPD AASCVTGSPS SWETSPAAQF  240
QTSSQCQNGC SSTTSGDMFG ESWSELLARA SHDDADSAGL PDFGLFEETG DSLWSLDDIW  300
QQPLY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C4e-243613924126MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in the jasmonate-dependent defense responses to the rice blast fungus Magnaporthe oryzae. Does not seem to function in the salicylic acid-dependent signaling pathway. {ECO:0000269|PubMed:11310740}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5KG188900.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by jasmonate (JA), wounding and infection by the fungal pathogen Magnaporthe oryzae. {ECO:0000269|PubMed:11310740}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9524381e-167EU952438.1 Zea mays clone 1280407 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025817284.10.0transcription factor JAMYB-like
SwissprotQ2QZJ83e-81JAMYB_ORYSJ; Transcription factor JAMYB
TrEMBLA0A2S3HVZ61e-180A0A2S3HVZ6_9POAL; Uncharacterized protein
STRINGPavir.Ea00964.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19838330
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G48000.12e-73myb domain protein 112
Publications ? help Back to Top
  1. Ahn IP,Kim S,Kang S,Suh SC,Lee YH
    Rice Defense Mechanisms Against Cochliobolus miyabeanus and Magnaporthe grisea Are Distinct.
    Phytopathology, 2005. 95(11): p. 1248-55
    [PMID:18943354]
  2. Campos-Soriano L,García-Martínez J,San Segundo B
    The arbuscular mycorrhizal symbiosis promotes the systemic induction of regulatory defence-related genes in rice leaves and confers resistance to pathogen infection.
    Mol. Plant Pathol., 2012. 13(6): p. 579-92
    [PMID:22212404]
  3. Yokotani N, et al.
    Role of the rice transcription factor JAmyb in abiotic stress response.
    J. Plant Res., 2013. 126(1): p. 131-9
    [PMID:22847900]
  4. Wang D, et al.
    Expression analysis of innate immunity related genes in the true/field blast resistance gene-mediated defence response.
    Biotechnol. Biotechnol. Equip., 2014. 28(6): p. 999-1007
    [PMID:26740780]
  5. Fred AK,Kiswara G,Yi G,Kim KM
    Screening Rice Cultivars for Resistance to Bacterial Leaf Blight.
    J. Microbiol. Biotechnol., 2016. 26(5): p. 938-45
    [PMID:26869604]