PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5KG151000.2.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 353aa    MW: 38145.9 Da    PI: 7.6008
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5KG151000.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM160.75.6e-5081511128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                          lppGfrFhPtdeel+ +yL+k++++ ++++  +i+evdiyk++PwdLp+k+  +e ewyfFs+rd+ky++g r+nra+ sgyWkatg+dk
  Pavir.5KG151000.2.p   8 LPPGFRFHPTDEELILHYLRKRAAAAPCPA-PIIAEVDIYKFDPWDLPAKAIFGEAEWYFFSPRDRKYPNGVRPNRAAGSGYWKATGTDK 96 
                          79***************************9.88***************77777999********************************** PP

                  NAM  91 evlsk..kgel.................vglkktLvfykgrapkgektdWvmheyrl 128
                          +++ +  +                    +g+kk Lvfykgr pkg kt+W+mheyrl
  Pavir.5KG151000.2.p  97 PITLSssS--SgagaaaapdpssdsramIGVKKALVFYKGRPPKGLKTSWIMHEYRL 151
                          ***98550..345556667777777777***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.7E-605185IPR003441NAC domain
PROSITE profilePS5100557.828185IPR003441NAC domain
PfamPF023652.4E-269151IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MASPCAALPP GFRFHPTDEE LILHYLRKRA AAAPCPAPII AEVDIYKFDP WDLPAKAIFG  60
EAEWYFFSPR DRKYPNGVRP NRAAGSGYWK ATGTDKPITL SSSSSGAGAA AAPDPSSDSR  120
AMIGVKKALV FYKGRPPKGL KTSWIMHEYR LAEALAAANT YRPMRFKNSS SMRLDDWVLC  180
RIYKKTTPQL YCSPPHDDET SMDGGLDLGR QHDGSSASVG DIVAAYAPAG GLPRPASISD  240
YLVDFNYSPV SELLESMPAP ETAAQLGTMD AAGRLFYAAN HGEAAASSSS TAQQQSSHKR  300
RFMEDYSNSD LNLLHASSSK RVMSDQLASS MASNLAFSSV FEPGQTSLPD RI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A6e-69818715170Stress-induced transcription factor NAC1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Up-regulated during anther and flower development and leaf senescence. {ECO:0000269|PubMed:22278768}.
UniprotTISSUE SPECIFICITY: Highest expression in stamens. Expressed in leaves. {ECO:0000269|PubMed:18813954, ECO:0000269|PubMed:22278768}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor of the NAC family associated with male fertility. Involved in anther development, but not in senescence. Reduced expression of NAC5 via RNAi leads to male-sterility. {ECO:0000269|PubMed:22278768}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5KG151000.2.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by drought, salt and cold treatments. {ECO:0000269|PubMed:18813954}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9554201e-137EU955420.1 Zea mays clone 1531701 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025816084.10.0NAC transcription factor 29-like
SwissprotQ8H4S42e-83NAC10_ORYSJ; NAC domain-containing protein 10
TrEMBLA0A3L6R3R60.0A0A3L6R3R6_PANMI; NAC domain-containing protein 18-like
STRINGPavir.Ea00837.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04070.12e-74NAC domain containing protein 47
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]