PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.5KG097100.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | ERF | ||||||||
Protein Properties | Length: 243aa MW: 25534.7 Da PI: 9.4471 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 42.9 | 1.2e-13 | 74 | 122 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+ykGV + +grW A+I++ r +r++lg+f +e Aa+a++ a+++++g Pavir.5KG097100.1.p 74 SRYKGVVPQP-NGRWGAQIYE------RhARVWLGTFPDEEAAARAYDVAALRYRG 122 78****9888.8*********......44*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 8.0E-9 | 74 | 122 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.11E-17 | 74 | 130 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 4.47E-15 | 74 | 130 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 3.2E-21 | 75 | 130 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.6E-23 | 75 | 136 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.852 | 75 | 130 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.0E-5 | 76 | 87 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.0E-5 | 96 | 112 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF101936 | 1.96E-6 | 140 | 175 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 3.6E-7 | 140 | 179 | IPR015300 | DNA-binding pseudobarrel domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 243 aa Download sequence Send to blast |
MGMVVESISP TAAEASSASS RSTGASTATT ESGAAQQPPL AAAPASGEVS PSPADEQAVT 60 SQPSAAAAVP QGSSRYKGVV PQPNGRWGAQ IYERHARVWL GTFPDEEAAA RAYDVAALRY 120 RGREAATNFP GAGASAPELG WSRFVREKGL RAGDTIVFSH STYGPEKQLF IDCKKTNKTA 180 EKPKEAAARV VRLFGVDIAG DGCQKRARPP VEMAFEKGHQ ELFLKKQCVA HHRSPALGAF 240 LL* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.5KG097100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FP100686 | 5e-66 | FP100686.1 Phyllostachys edulis cDNA clone: bphyem201a06, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015693577.1 | 8e-51 | PREDICTED: AP2/ERF and B3 domain-containing protein Os01g0141000-like | ||||
Swissprot | Q9AWS0 | 1e-35 | Y1410_ORYSJ; AP2/ERF and B3 domain-containing protein Os01g0141000 | ||||
TrEMBL | A0A2S3HXM7 | 2e-46 | A0A2S3HXM7_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J23476.1.p | 1e-68 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP18707 | 5 | 6 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G25730.1 | 3e-18 | ethylene response DNA binding factor 3 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.5KG097100.1.p |
Publications ? help Back to Top | |||
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