PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.5KG078200.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | ERF | ||||||||
Protein Properties | Length: 258aa MW: 27775.9 Da PI: 5.4661 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.5 | 1.6e-18 | 79 | 128 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 y+GVr++ +g+WvAeIr+p + r +r +lg+f ta eAa a+++a+k+++g Pavir.5KG078200.1.p 79 AYRGVRQRT-WGKWVAEIREP---N-RgRRLWLGSFPTAVEAAYAYDEAAKAMYG 128 59****999.**********8...3.35*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 4.7E-13 | 78 | 128 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.0E-33 | 79 | 142 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.5E-20 | 79 | 137 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 21.443 | 79 | 136 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.1E-9 | 80 | 91 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.23E-19 | 80 | 138 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 1.9E-29 | 80 | 137 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.1E-9 | 102 | 118 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 258 aa Download sequence Send to blast |
MDLGHGGQGG EGDSSGGQVR KKRTRRKSTG PDSIAETIKW WKEQNQKLQD ESGSRKAPAK 60 GSKKGCMAGK GGPENGNCAY RGVRQRTWGK WVAEIREPNR GRRLWLGSFP TAVEAAYAYD 120 EAAKAMYGAK ARVNFSENSP DANSGCTSAL SLLASSVPAV ALHGFNEKDE VESVETEVHD 180 VKAEVNNDLG SVHVECKSVE VLQSGGSVLQ KEGSVSCDYF NVEEVVEMII IELNADKKIE 240 VHEECLGGDD GFSLFAY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 6e-16 | 80 | 135 | 3 | 59 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.20564 | 0.0 | callus| leaf| root| stem |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.5KG078200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HQ132744 | 0.0 | HQ132744.1 Setaria italica dehydration responsive element-binding protein 2 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025816059.1 | 0.0 | dehydration-responsive element-binding protein 2A-like | ||||
Swissprot | A2WL19 | 1e-123 | DRE2A_ORYSI; Dehydration-responsive element-binding protein 2A | ||||
TrEMBL | A0A3L6QX70 | 0.0 | A0A3L6QX70_PANMI; Dehydration-responsive element-binding protein 2A isoform X1 | ||||
STRING | Pavir.Ea00429.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7315 | 35 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40340.1 | 1e-35 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.5KG078200.1.p |