PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.5KG068500.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | C3H | ||||||||
Protein Properties | Length: 256aa MW: 27563.7 Da PI: 8.4815 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 27.6 | 4.9e-09 | 73 | 99 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ykt+lC f ++G C y d C+FaHg+ Pavir.5KG068500.1.p 73 YKTKLCEKFEAGGRCAYEDGCTFAHGQ 99 9************************97 PP | |||||||
2 | zf-CCCH | 17.3 | 8.3e-06 | 146 | 164 | 7 | 25 |
SGGGGTS--TTTTT-SS-S CS zf-CCCH 7 rffartGtCkyGdrCkFaH 25 f+ GtC++G+rC++aH Pavir.5KG068500.1.p 146 FEFRDRGTCHFGERCSYAH 164 568889************* PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1000.10 | 3.7E-16 | 67 | 105 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.7E-9 | 71 | 103 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.911 | 72 | 100 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0011 | 72 | 99 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.8E-6 | 73 | 99 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.803 | 139 | 167 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.22E-5 | 139 | 165 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.066 | 139 | 166 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.9E-5 | 140 | 165 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 256 aa Download sequence Send to blast |
MERDATAAGF GGASRWKASP DGVIVLPAGS AAPQHARHQR DREREREQPR ENCQGAGVFG 60 DQQHPEPPEK VFYKTKLCEK FEAGGRCAYE DGCTFAHGQA ELRPPLHHVP PGHIIKRRTP 120 PPPPPPPPPP PGADTPYGAY HGKVCFEFRD RGTCHFGERC SYAHASAAEV AEMRYPGGPR 180 SVEHALRNAP PLGRAAYAPG ARGISISTSS YAPAARAFQS APAAAAGEDG RRFSRLELLG 240 RKKTSGIYGD WPEED* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.5KG068500.1.p |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025819424.1 | 1e-120 | zinc finger CCCH domain-containing protein 1-like | ||||
TrEMBL | A0A3L6SR09 | 1e-119 | A0A3L6SR09_PANMI; Zinc finger CCCH domain-containing protein 1-like | ||||
STRING | Pavir.Ea00381.1.p | 1e-152 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13364 | 20 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19360.1 | 8e-08 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.5KG068500.1.p |