PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.5KG052600.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | Dof | ||||||||
Protein Properties | Length: 242aa MW: 24245.8 Da PI: 9.0828 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 115.7 | 1.9e-36 | 43 | 96 | 6 | 59 |
zf-Dof 6 lkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknk 59 l+cprC+s +tkfCyynny+ sqPr+fC++CrryWt+GGalrnvPvGgg+rk Pavir.5KG052600.1.p 43 LPCPRCESVDTKFCYYNNYTQSQPRHFCRTCRRYWTRGGALRNVPVGGGTRKAT 96 78*************************************************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50884 | 28.341 | 43 | 97 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 1.2E-31 | 43 | 95 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 45 | 81 | IPR003851 | Zinc finger, Dof-type |
ProDom | PD007478 | 1.0E-17 | 45 | 88 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 242 aa Download sequence Send to blast |
MVRCAADMEA GDQAPEGVAL AVVPPAAGGA GGGAGGGREP LGLPCPRCES VDTKFCYYNN 60 YTQSQPRHFC RTCRRYWTRG GALRNVPVGG GTRKATPATR RKRPASTPPA PPAGAGVPLP 120 PPPLTASGPH AALLRQYGGL PFPAPAMALP LAAVDPDRRL LDLGGSFGSL LAAAPGPDVV 180 GAHFSAGFLV GGLAPALVHA PGGGAAAAAG TLPPPPPQPQ QVSQALPEGL LWSMGWPDLS 240 I* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.5KG052600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT061950 | 7e-65 | BT061950.2 Zea mays full-length cDNA clone ZM_BFb0200H06 mRNA, complete cds. | |||
GenBank | KJ727013 | 7e-65 | KJ727013.1 Zea mays clone pUT3994 C2C2-DOF transcription factor (DOF7) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025818172.1 | 8e-92 | dof zinc finger protein DOF1.7 | ||||
TrEMBL | A0A2T7DSB6 | 7e-98 | A0A2T7DSB6_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ea00244.1.p | 1e-165 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP140 | 37 | 367 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38000.1 | 2e-23 | DNA binding with one finger 4.7 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.5KG052600.1.p |