PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pavir.5KG046000.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 243aa MW: 25428 Da PI: 6.2468 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 53.9 | 4.4e-17 | 49 | 97 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr + +g+Wv+eIr+p++ + r++lg+f +e+Aa+a++ a+++++g Pavir.5KG046000.1.p 49 YRGVRMRA-WGKWVSEIREPRK---KSRIWLGTFPCPEMAARAHDVAALSIKG 97 9****998.**********843...6***********************9987 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 5.2E-12 | 47 | 97 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.09E-20 | 48 | 106 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 22.8 | 48 | 105 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.2E-33 | 48 | 111 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 8.0E-31 | 48 | 106 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.1E-9 | 49 | 60 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 5.20E-29 | 49 | 107 | No hit | No description |
PRINTS | PR00367 | 3.1E-9 | 71 | 87 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 243 aa Download sequence Send to blast |
MSDLSSDTSS TTSSYSSSPS TSSSSRKSSG GGKSSKRPRA DDGGAPPAYR GVRMRAWGKW 60 VSEIREPRKK SRIWLGTFPC PEMAARAHDV AALSIKGARA VLNFPDLAPA FPRPASLAPR 120 DVQAAAARAA LMQHRHQPGG AAAGTDSSSS SSPEPAGGCA AAAAAADDAQ RPAAGSNGHR 180 HDEPEPSPAE RQPAQVEVAE LVFDELAPLW VEDVVEFGPS DHPWTPYDGL DAVGFQPLLW 240 EY* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-15 | 49 | 105 | 15 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Pvr.19931 | 1e-51 | stem |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Pavir.5KG046000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | DQ353852 | 1e-112 | DQ353852.1 Triticum aestivum AP2 domain transcription factor TaDREB2 mRNA, complete cds. | |||
GenBank | GU785008 | 1e-112 | GU785008.1 Triticum turgidum subsp. durum drought responsive element binding transcription factor 2 (DREB2) gene, promoter region and complete cds. | |||
GenBank | HG670306 | 1e-112 | HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025818661.1 | 1e-102 | ethylene-responsive transcription factor ERF035-like | ||||
TrEMBL | A0A2T8IPB8 | 1e-101 | A0A2T8IPB8_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Eb00249.1.p | 1e-100 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP159 | 35 | 354 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G11590.1 | 1e-44 | ERF family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Pavir.5KG046000.1.p |