PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5KG014600.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C2H2
Protein Properties Length: 462aa    MW: 48795.4 Da    PI: 8.6105
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5KG014600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2140.00015114136123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++C++C+++F ++     H+r+H
  Pavir.5KG014600.1.p 114 FPCHICSRRFHSPKAVDGHMRVH 136
                          89*******************99 PP
2zf-C2H211.50.0009294312119
                          EEETTTTEEESSHHHHHHH CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrH 19 
                          y+C+ Cgks+s++  L  H
  Pavir.5KG014600.1.p 294 YSCKLCGKSYSSHQGLGGH 312
                          99*********99888666 PP
3zf-C2H214.88.1e-05356378123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++C +C+k+F++  +L  H+r+H
  Pavir.5KG014600.1.p 356 HECRKCHKVFPTGVELGGHMRMH 378
                          78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.388114141IPR007087Zinc finger, C2H2
PfamPF138940.0013114136No hitNo description
SuperFamilySSF576673.46E-7114136No hitNo description
SMARTSM003550.0057114136IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280116136IPR007087Zinc finger, C2H2
SuperFamilySSF576673.46E-7289316No hitNo description
PfamPF139129.6E-4294316IPR007087Zinc finger, C2H2
SMARTSM003550.95294316IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.221294321IPR007087Zinc finger, C2H2
PROSITE patternPS000280296316IPR007087Zinc finger, C2H2
SuperFamilySSF576671.79E-5354384No hitNo description
PfamPF139121.7E-8356379IPR007087Zinc finger, C2H2
SMARTSM003550.024356378IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.575356383IPR007087Zinc finger, C2H2
PROSITE patternPS000280358378IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 462 aa     Download sequence    Send to blast
MGSDSSSRHR PLRDLDDGGD DIEEGDYVPG RDQASDPGSG TDGDEELRQL HRRLEGELGR  60
RVSWLEVVMA SGRVAMPPRL AHLSRESDRK ISDSGSHNAV SSSVISSGAP APRFPCHICS  120
RRFHSPKAVD GHMRVHGNGR QVPRQLGRHR EARLDGKPSV AVSLNSESTD NNSTAVAAVR  180
PLEPAPMAIA MTSPPASPVV STGTNLSGED SSNASAQPMH YEPPVENLVT VAYPSSTAVV  240
VHQHAAPPPA SGQARPAHQP PVPLPAAQQA QLVRQPPGPP RARPARAPQP AREYSCKLCG  300
KSYSSHQGLG GHAAGHKNRQ KEAEAAAAAA AAMMGQEDGG AFLAAFRRGR RAQPPHECRK  360
CHKVFPTGVE LGGHMRMHYT GPPIVHKKNK KWGLVSEDDL RLALSTATEA TPPPPAPAVD  420
GRVRLFGIDI DPQVQAPPPP PPEDQRSGTA GGSSSSAGEQ E*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5KG014600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022682476.11e-129replication initiator 1-like
TrEMBLA0A3L6SPK21e-169A0A3L6SPK2_PANMI; Uncharacterized protein
STRINGPavir.J09607.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP76121136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19580.22e-10zinc-finger protein 2