PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5KG013700.2.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family G2-like
Protein Properties Length: 473aa    MW: 50915.9 Da    PI: 7.5359
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5KG013700.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like87.21.5e-27197251156
              G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                          k +++WtpeLH+rFv+aveqL G++kA+P++il++m++++Lt+++++SHLQkYR++
  Pavir.5KG013700.2.p 197 KRKVDWTPELHRRFVQAVEQL-GIDKAVPSRILDIMGIDCLTRHNIASHLQKYRSH 251
                          5799*****************.********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.638194253IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.7E-26195254IPR009057Homeodomain-like
SuperFamilySSF466897.35E-18196254IPR009057Homeodomain-like
TIGRFAMsTIGR015571.5E-26197251IPR006447Myb domain, plants
PfamPF002491.1E-6200249IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007165Biological Processsignal transduction
GO:0009658Biological Processchloroplast organization
GO:0009910Biological Processnegative regulation of flower development
GO:0010380Biological Processregulation of chlorophyll biosynthetic process
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 473 aa     Download sequence    Send to blast
MLEVSILRSP SKADHHQRGF VGDHVVFPTS GSVCCDDFMV DDNLLDYIDF SCDAVPFFDA  60
DGDILPDLEV DPTELLAEFS SPEASPTAAR AEAKPPDDLR RRQPEEEAVV LSTSTTTATI  120
VEEKKAAERV LSAKDEKLAA AGVSVTTRTM RKKVDGEGSS AEEDSGGAGS DTKWSASAGG  180
HGKKKTAAAD KNSSSGKRKV DWTPELHRRF VQAVEQLGID KAVPSRILDI MGIDCLTRHN  240
IASHLQKYRS HRKHLMAREA EAATWAQKRH QYMYAPAPAR KLDAAAAGGG PWVVPTTIGF  300
PRPALCRALH VWGHPPSAGG VDAPPTMLPV WPRHLAPPRP WAPPPAYWQH QYNAARKWGP  360
HHQAAAAAAA VTPAMVPQLP RFPVPPHPAT MYRPTCSSSM VVPPPPPTST KLADLQLQLD  420
AHPSKESIDA AIGDVLVKPW LPLPLGLKPP SMDSVMSELH KHGIPKVPPS SG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A3e-15193249157ARR10-B
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.160461e-104leaf| root| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in leaves. {ECO:0000269|PubMed:11340194}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional activator that promotes chloroplast development. Acts as an activator of nuclear photosynthetic genes involved in chlorophyll biosynthesis, light harvesting, and electron transport (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00022PBMTransfer from AT2G20570Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5KG013700.2.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. {ECO:0000269|PubMed:11340194}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3185791e-89AF318579.1 Zea mays putative transcription factor GOLDEN 2 mRNA, complete cds.
GenBankBT0628381e-89BT062838.1 Zea mays full-length cDNA clone ZM_BFb0374G22 mRNA, complete cds.
GenBankEU9567921e-89EU956792.1 Zea mays clone 1574106 transcription factor ZmGLK1 mRNA, complete cds.
GenBankKJ7276891e-89KJ727689.1 Zea mays clone pUT5628 G2-like transcription factor (GLK13) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025818980.10.0probable transcription factor GLK2 isoform X3
SwissprotQ5NAN51e-102GLK2_ORYSJ; Probable transcription factor GLK2
TrEMBLA0A2T8IPG30.0A0A2T8IPG3_9POAL; Uncharacterized protein
STRINGPavir.Ea00014.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20570.11e-54GBF's pro-rich region-interacting factor 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]