PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pavir.5KG013700.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
||||||||
Family | G2-like | ||||||||
Protein Properties | Length: 475aa MW: 51143.2 Da PI: 7.7474 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 87 | 1.9e-27 | 199 | 253 | 1 | 56 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k +++WtpeLH+rFv+aveqL G++kA+P++il++m++++Lt+++++SHLQkYR++ Pavir.5KG013700.1.p 199 KVKVDWTPELHRRFVQAVEQL-GIDKAVPSRILDIMGIDCLTRHNIASHLQKYRSH 253 5689*****************.********************************86 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.625 | 196 | 255 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.6E-26 | 197 | 256 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 8.96E-18 | 198 | 256 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.7E-26 | 199 | 253 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.1E-6 | 202 | 251 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0007165 | Biological Process | signal transduction | ||||
GO:0009658 | Biological Process | chloroplast organization | ||||
GO:0009910 | Biological Process | negative regulation of flower development | ||||
GO:0010380 | Biological Process | regulation of chlorophyll biosynthetic process | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:1900056 | Biological Process | negative regulation of leaf senescence | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 475 aa Download sequence Send to blast |
MLEVSILRSP SKADHHQRGF VGDHVVFPTS GSVCCDDFMV DDNLLDYIDF SCDAVPFFDA 60 DGDILPDLEV DPTELLAEFS SPEASPTAAR AEAKPPDDLR RRQPEEEAVV LSTSTTTATI 120 VEEKKAAERV LSAKDEKLAA AGVSVTTRTM RKKVDGEGSS AEEDSGGAGS DTKWSASAGG 180 HGKKKTAAAD KNSSSGKRKV KVDWTPELHR RFVQAVEQLG IDKAVPSRIL DIMGIDCLTR 240 HNIASHLQKY RSHRKHLMAR EAEAATWAQK RHQYMYAPAP ARKLDAAAAG GGPWVVPTTI 300 GFPRPALCRA LHVWGHPPSA GGVDAPPTML PVWPRHLAPP RPWAPPPAYW QHQYNAARKW 360 GPHHQAAAAA AAVTPAMVPQ LPRFPVPPHP ATMYRPTCSS SMVVPPPPPT STKLADLQLQ 420 LDAHPSKESI DAAIGDVLVK PWLPLPLGLK PPSMDSVMSE LHKHGIPKVP PSSG* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 1e-15 | 195 | 251 | 1 | 57 | ARR10-B |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Pvr.16046 | 1e-106 | leaf| root| stem |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in leaves. {ECO:0000269|PubMed:11340194}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcriptional activator that promotes chloroplast development. Acts as an activator of nuclear photosynthetic genes involved in chlorophyll biosynthesis, light harvesting, and electron transport (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00022 | PBM | Transfer from AT2G20570 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Pavir.5KG013700.1.p |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By light. {ECO:0000269|PubMed:11340194}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AF318579 | 1e-95 | AF318579.1 Zea mays putative transcription factor GOLDEN 2 mRNA, complete cds. | |||
GenBank | BT062838 | 1e-95 | BT062838.1 Zea mays full-length cDNA clone ZM_BFb0374G22 mRNA, complete cds. | |||
GenBank | EU956792 | 1e-95 | EU956792.1 Zea mays clone 1574106 transcription factor ZmGLK1 mRNA, complete cds. | |||
GenBank | KJ727689 | 1e-95 | KJ727689.1 Zea mays clone pUT5628 G2-like transcription factor (GLK13) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025818980.1 | 0.0 | probable transcription factor GLK2 isoform X3 | ||||
Swissprot | Q5NAN5 | 1e-105 | GLK2_ORYSJ; Probable transcription factor GLK2 | ||||
TrEMBL | A0A2T8IPG4 | 0.0 | A0A2T8IPG4_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ea00014.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2415 | 38 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G20570.1 | 1e-57 | GBF's pro-rich region-interacting factor 1 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Pavir.5KG013700.1.p |
Publications ? help Back to Top | |||
---|---|---|---|
|