PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.5KG004800.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | NAC | ||||||||
Protein Properties | Length: 392aa MW: 42468.1 Da PI: 8.1508 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 45.3 | 2.8e-14 | 9 | 146 | 1 | 126 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.....kvkaeekew....yfFskrdkkyatgkrknr.atks 80 lppG+ F+P+ + + +yLk+ ++g + ++++v++ vd+y+ +P L ++ e +w + ++ +++ r +r +++ Pavir.5KG004800.1.p 9 LPPGVYFRPSPGDCLRFYLKPWIAGVPPSTDRVVQGVDLYSDNPAALLLglppgFSRGFEYKWlvlgHCPCQGGGRSSGRARMKReVATG 98 79****************************999**************6335554333334477665677777777777888999966667 PP NAM 81 gyWkatgkdkevlskkgelvglkktLvfy.......kgrapkgektdWvmhey 126 yWk ++ +v + g +k+L+fy kgr+ g+kt W+m+e Pavir.5KG004800.1.p 99 DYWKVEQSSMAVGA-----DGDRKSLAFYtsssgggKGRRDGGVKTPWLMEEL 146 79**9999888877.....688*******999888889*************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.53E-16 | 3 | 155 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 19.939 | 9 | 174 | IPR003441 | NAC domain |
Pfam | PF02365 | 9.2E-7 | 10 | 146 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 392 aa Download sequence Send to blast |
MAAAPFQALP PGVYFRPSPG DCLRFYLKPW IAGVPPSTDR VVQGVDLYSD NPAALLLGLP 60 PGFSRGFEYK WLVLGHCPCQ GGGRSSGRAR MKREVATGDY WKVEQSSMAV GADGDRKSLA 120 FYTSSSGGGK GRRDGGVKTP WLMEELNAPE DEADALGGRR GESTVPVFCQ LYISPRASKD 180 EKLLILGEER VPFDRYGNAK AVRVLLPEDL FDKVFDVVHG QGQAPPPPWS APCVPAQRAE 240 WPPLVADHHH GIAMLPRSVP TGHLAAPPRP LKQRLGGADR EIPSFIVHGD DECSYRAADA 300 SDFREKEPVP TPSPRQEITG TAAAAAWPAS TGTSVHSDGM GCLTATSSLM TSRWTTCQTS 360 RCTTTRWTTS RWTIGKISLT QFFFLIRTDS I* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.5KG004800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A3L6SXD6 | 4e-80 | A0A3L6SXD6_PANMI; Uncharacterized protein | ||||
STRING | Pavir.J24446.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13570 | 17 | 24 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G55210.1 | 1e-08 | NAC domain containing protein 63 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.5KG004800.1.p |