PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.4NG336600.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

NAC

Protein Properties

Length: 285aa MW: 32520.9 Da PI: 7.6637

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.4NG336600.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	152.6	1.8e-47	13	139	3	128
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 pGfrFhPt+eel+ +yLk+ +egkkl++ ++i++v++y++ePw+Lp ++ +e+ewyfF++rd++++++ r++r+t++g+Wkatg+d++v Pavir.4NG336600.1.p 13 PGFRFHPTEEELLEFYLKQAAEGKKLKF-DIIPRVQLYRHEPWELPGLARIGEREWYFFVPRDHRKQQQARPSRTTERGFWKATGSDRAV 101 9************************9.99***********8778899*********************************** PP NAM 93 lsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++ ++l+g kktLvfy+grap+g+ktdWvm+eyrl Pavir.4NG336600.1.p 102 RCSadPKRLIGHKKTLVFYEGRAPRGTKTDWVMNEYRL 139 98777788**************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	53.139	11	159	IPR003441	NAC domain
SuperFamily	SSF101941	7.32E-54	12	159	IPR003441	NAC domain
Pfam	PF02365	1.7E-24	13	139	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 285 aa Download sequence Send to blast
MEQRRGAAEL ELPGFRFHPT EEELLEFYLK QAAEGKKLKF DIIPRVQLYR HEPWELPGLA 60 RIGEREWYFF VPRDHRKQQQ ARPSRTTERG FWKATGSDRA VRCSADPKRL IGHKKTLVFY 120 EGRAPRGTKT DWVMNEYRLP DAAGNQQQED IVLCKIYRKA VSLKELEHRV AMEELARASP 180 ACTPSADTAG SPADSTMSSS PSDHHPQGGG VPQHGDEIMM KKEVMMADES TAVLRPATLS 240 LPQLEVAKQQ QQQEWVMQDP FLTQLRSPWM ESWSPYFASS VLNL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	3e-46	3	159	6	168	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds sequence-specific DNA motifs. Involved in stress response. Plays a positive role in drought and salt stress tolerance through the modulation of abscisic acid-mediated signaling. {ECO:0000269\|PubMed:26834774}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.4NG336600.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by drought stress, salt stress and abscisic acid (ABA). {ECO:0000269\|PubMed:26834774}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU967633	1e-116	EU967633.1 Zea mays clone 304978 mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025811820.1	1e-139	NAC domain-containing protein 22-like
Swissprot	Q10S65	2e-94	NAC22_ORYSJ; NAC domain-containing protein 22
TrEMBL	A0A3L6PHH4	1e-141	A0A3L6PHH4_PANMI; NAC domain-containing protein 67-like
STRING	Pavir.Db00028.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1770	38	105

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G17040.1	3e-78	NAC domain containing protein 36

Link Out ? help Back to Top
Phytozome	Pavir.4NG336600.1.p

Publications ? help Back to Top
Hong Y,Zhang H,Huang L,Li D,Song F Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice. Front Plant Sci, 2016. 7: p. 4 [PMID:26834774]