PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.4NG301500.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family G2-like
Protein Properties Length: 462aa    MW: 49879.2 Da    PI: 5.015
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.4NG301500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like87.61.2e-27184238156
              G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                          k++++WtpeLH+rFv+aveqL G++kA+P++ile+m++++Lt+++++SHLQkYR++
  Pavir.4NG301500.1.p 184 KAKVDWTPELHRRFVQAVEQL-GIDKAVPSRILEIMGIDSLTRHNIASHLQKYRSH 238
                          6799*****************.********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.924181240IPR017930Myb domain
SuperFamilySSF466897.17E-19182241IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.3E-27182241IPR009057Homeodomain-like
TIGRFAMsTIGR015571.7E-26184238IPR006447Myb domain, plants
PfamPF002496.4E-8187236IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 462 aa     Download sequence    Send to blast
MLAVSSPVSC AHMEECRGGA GVEMEEIGHG PVSDDLDFDF TVDEIDFGDF FLRLEDGDAL  60
PDLEVDPGEI FTDFEAIATG SDGVMDQEVP SVQLLADAVQ LDAADPCSSV LCEESTTRVD  120
VEEEKGEYSN HAEEVVTGNN GDFGGGGGTV MAEEKSPSST TSSSQEAESR HKSTSKHSSQ  180
GKKKAKVDWT PELHRRFVQA VEQLGIDKAV PSRILEIMGI DSLTRHNIAS HLQKYRSHRK  240
HMLAREAEAA SWTQRRQMYA AGGAPAAAKR PDYSNAWTVP TIGFPPPPPP PPPHPMQHFG  300
RPLHVWGHPT PGVESPRVPM WPRHLVPRAP TTPWAPPPSD PAFWHHPYMR GPTHMPGQVA  360
PCVAVPMPAA RFPAPPVRGV LPCPPPMYRP LVPPELGSKS PQDTQLQLQI QPSSESIDAA  420
IGDVLSKPWL PLPLGLKPPS VDSVMVELQR QGVADVPPAC G*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A6e-17181236257ARR10-B
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.120510.0leaf| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in leaves. {ECO:0000269|PubMed:11340194}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional activator that promotes chloroplast development. Acts as an activator of nuclear photosynthetic genes involved in chlorophyll biosynthesis, light harvesting, and electron transport. {ECO:0000269|PubMed:19808806}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.4NG301500.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. {ECO:0000269|PubMed:11340194}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025812542.10.0probable transcription factor GLK1
SwissprotQ5Z5I41e-164GLK1_ORYSJ; Probable transcription factor GLK1
TrEMBLA0A3L6PCE10.0A0A3L6PCE1_PANMI; Putative transcription factor GLK1
STRINGPavir.Db01285.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24153886
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20570.12e-58GBF's pro-rich region-interacting factor 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Zhang Y, et al.
    A highly efficient rice green tissue protoplast system for transient gene expression and studying light/chloroplast-related processes.
    Plant Methods, 2011. 7(1): p. 30
    [PMID:21961694]