PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.4NG298700.2.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

G2-like

Protein Properties

Length: 182aa MW: 20492.2 Da PI: 9.7558

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.4NG298700.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	98.3	5.5e-31	18	71	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 pr+rWt+eLH++Fveave LGG+++AtPk+il+lm+vkg++++h+kSHLQ+YR+ Pavir.4NG298700.2.p 18 PRMRWTEELHRQFVEAVECLGGQDEATPKRILQLMGVKGVSISHIKSHLQMYRS 71 8****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	10.826	14	74	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	3.3E-29	16	72	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.51E-17	17	73	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.1E-24	18	71	IPR006447	Myb domain, plants
Pfam	PF00249	3.6E-9	19	70	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 182 aa Download sequence Send to blast
MRGFERKGVR QYNWSEVPRM RWTEELHRQF VEAVECLGGQ DEATPKRILQ LMGVKGVSIS 60 HIKSHLQMYR SSSNSSSAHQ SSLQKSTSSS NSKRVFLNRE DHCAYASPDG NTAASDKNMY 120 AALLRGCSQS SPYQIIPSLQ EVFRSWEQSR GRVPWNSNVL TIEKVAGCRT AKLPILPWID 180 C*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	2e-17	19	72	3	56	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-17	19	72	3	56	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-17	19	72	3	56	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-17	19	72	3	56	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.4NG298700.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025810426.1	1e-101	probable transcription factor KAN3
TrEMBL	A0A3L6S1V1	1e-103	A0A3L6S1V1_PANMI; Uncharacterized protein
STRING	Pavir.Db00422.1.p	1e-119	(Panicum virgatum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02060.1	4e-25	G2-like family protein

Link Out ? help Back to Top
Phytozome	Pavir.4NG298700.2.p