PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.4NG226600.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 446aa    MW: 47269.1 Da    PI: 6.5053
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.4NG226600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY84.41.1e-26162219359
                          -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                          D + WrKYGqK +kgs++ rsYY+C++  +C+++k+ver+++d +++++ Y+geH+h+
  Pavir.4NG226600.1.p 162 DAWMWRKYGQKGIKGSPHVRSYYKCSTDkQCRARKHVERCTDDSRYLVVSYTGEHTHP 219
                          99***********************9998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.3E-27154221IPR003657WRKY domain
SuperFamilySSF1182901.96E-23158221IPR003657WRKY domain
SMARTSM007745.3E-30160220IPR003657WRKY domain
PROSITE profilePS5081128.61162221IPR003657WRKY domain
PfamPF031066.6E-22162219IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 446 aa     Download sequence    Send to blast
MGQNDGRNGD RSNWDLHDFL NFACGDPLTP PPPTTDDPFA IQKVFAKFFS TTTKHGHGVA  60
DGPGPAAGDR SGSCRCWRPR PGVSAAPPGP QPEDLPDSPE GNLDLLPQED PIDDDCCMLI  120
SPLPNNTEPS SGGAGPSRSR RRRKERTVTR SWDLNDGAPP PDAWMWRKYG QKGIKGSPHV  180
RSYYKCSTDK QCRARKHVER CTDDSRYLVV SYTGEHTHPA PLIRNIVTRN PRVVVNPAPP  240
PPPVTNITVE AAAPAPSVTA SLTPTAPALA PPTPFPKIPA AVEGPPQAPA LPAFAAAASV  300
SPTLKISAVE ETRKAPAPPA IAASASLSPT TPLRSPPAVT MMIIHADMTP KEDSVLFAKR  360
DDDKPQDGVP LPMPEELAPV HHGAPGGGGN YNMMFPATYG YEPAAGSSSS SGDGSTRTAP  420
PVSAPIGNLV DETFYQLEPC LWCWP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A7e-141622211674WRKY transcription factor 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1139144RRRRKE
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.4NG226600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGPavir.Db01475.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2773445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29280.19e-22WRKY DNA-binding protein 65