PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.4NG226500.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 248aa    MW: 26570.7 Da    PI: 5.1941
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.4NG226500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY71.11.5e-222782359
                         -SS-EEEEEEE--TT-.SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY  3 DgynWrKYGqKevkgs.efprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59
                         D ++WrKYGqK++kgs ++pr+YYrC++  +C+++k+ver++ d ++++   +geH h+
  Pavir.4NG226500.1.p 27 DPWAWRKYGQKPIKGSpPYPRGYYRCSTDkDCKARKQVERCRADHTTLI---TGEHSHP 82
                         89*************9459*******9998************8877665...5888886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.4E-222184IPR003657WRKY domain
SuperFamilySSF1182909.42E-192384IPR003657WRKY domain
SMARTSM007744.6E-262583IPR003657WRKY domain
PfamPF031061.1E-182782IPR003657WRKY domain
PROSITE profilePS5081123.1812784IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MYVCCRKKKS QVSKEVTRVP AGAPSPDPWA WRKYGQKPIK GSPPYPRGYY RCSTDKDCKA  60
RKQVERCRAD HTTLITGEHS HPVPLHRNTL AGTTRNKPQP PSSPSPGDEP PQPQGSPSAS  120
AGLSPTTPLR CPPAGLEHGD EDEEEAVAAS LLLEDVEMEE EDDVLLFLKL SPGPDDGNGC  180
KDTMLLLEPN ERGPAGNGGG CWEDDVKLSV ITTSLSRTSM NISEEKFPVT GLSPWEATAI  240
PAASSSA*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.4NG226500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0686093e-76BT068609.2 Zea mays full-length cDNA clone ZM_BFb0349G13 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025812935.13e-73WRKY transcription factor 22-like
SwissprotQ9FLX87e-34WRK27_ARATH; Probable WRKY transcription factor 27
TrEMBLA0A3L6PDU31e-116A0A3L6PDU3_PANMI; WRKY transcription factor 22-like
STRINGPavir.J27189.1.p1e-71(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125622536
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01250.12e-32WRKY family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Mukhtar MS,Liu X,Somssich IE
    Elucidating the role of WRKY27 in male sterility in Arabidopsis.
    Plant Signal Behav, 2017. 12(9): p. e1363945
    [PMID:28816593]