PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.4NG219700.4.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | C3H | ||||||||
Protein Properties | Length: 358aa MW: 40219.4 Da PI: 7.764 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 28.1 | 3.4e-09 | 24 | 44 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C f+++ G C+yG+rC++ H+ Pavir.4NG219700.4.p 24 VCTFYQK-GACSYGSRCRYDHV 44 5******.*************7 PP | |||||||
2 | zf-CCCH | 19.4 | 1.9e-06 | 140 | 161 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 ++C+ fa+ G C+yG+ C+ +Hg Pavir.4NG219700.4.p 140 PICS-FAAAGNCPYGEGCPQMHG 161 6788.*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 8.681 | 1 | 18 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.939 | 19 | 46 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0011 | 20 | 45 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 5.1E-5 | 21 | 43 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 9.2E-7 | 24 | 44 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.6E-4 | 24 | 43 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.343 | 136 | 163 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.016 | 137 | 162 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF57850 | 4.62E-12 | 193 | 269 | No hit | No description |
Gene3D | G3DSA:3.30.40.10 | 6.4E-9 | 198 | 264 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
CDD | cd00162 | 0.00168 | 204 | 264 | No hit | No description |
PROSITE profile | PS50089 | 11.929 | 205 | 263 | IPR001841 | Zinc finger, RING-type |
Pfam | PF00097 | 3.6E-6 | 205 | 262 | IPR018957 | Zinc finger, C3HC4 RING-type |
SMART | SM00184 | 3.2E-6 | 205 | 262 | IPR001841 | Zinc finger, RING-type |
PROSITE pattern | PS00518 | 0 | 229 | 238 | IPR017907 | Zinc finger, RING-type, conserved site |
PROSITE profile | PS50103 | 13.676 | 292 | 321 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.011 | 292 | 320 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 358 aa Download sequence Send to blast |
MHGACLKGEY CEFSHDWKDQ VNNVCTFYQK GACSYGSRCR YDHVKVSRNP TVPLPSPSSS 60 TARPSSTYLQ LSSSGHPPRT GHQTDSKNQR NQISVDVPAH SASKPAWRND FQHVVSEDGI 120 DWSSNQTLQN QTSLKPADLP ICSFAAAGNC PYGEGCPQMH GDLCSTCGKM CLHPYRPDER 180 EEHIKLCEKN HKRLESLKRS QEIECSVCLD CVLSKPTAAE RKFGLLSECD HPFCIACIRN 240 WRSNSPASGM DVNSALRACP ICRKLSYYVI PSVLWYFSKE EKEEIIESYK SKLKSIDCKY 300 FDFGTGSCPF GTSCFYRHAY RDGRLEEVVL RHLDADDGST VIAKNIRLSD FLSRMHL* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 194 | 199 | ESLKRS |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.1094 | 0.0 | callus| leaf| root |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed in dry seeds. Increased expression throughout imbibition and germination and when radicle and shoots are emerging. Up-regulated during cell differentiation. {ECO:0000269|PubMed:17870591}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in primary roots and leaves. Detected in vascular bundle tissues. {ECO:0000269|PubMed:17870591}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | E3 ubiquitin ligase catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.4NG219700.4.p |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT065629 | 0.0 | BT065629.1 Zea mays full-length cDNA clone ZM_BFb0371O01 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004965338.1 | 0.0 | E3 ubiquitin-protein ligase makorin | ||||
Swissprot | Q5ZA07 | 0.0 | C3H41_ORYSJ; E3 ubiquitin-protein ligase makorin | ||||
TrEMBL | K3XXQ2 | 0.0 | K3XXQ2_SETIT; Uncharacterized protein | ||||
STRING | Pavir.J40916.1.p | 0.0 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G08505.2 | 1e-131 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.4NG219700.4.p |
Publications ? help Back to Top | |||
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