PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pavir.4NG219700.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
||||||||
Family | C3H | ||||||||
Protein Properties | Length: 369aa MW: 41547 Da PI: 7.9435 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 18.2 | 4.5e-06 | 5 | 27 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 ++lC+ff+ G C G+ C F+H+ Pavir.4NG219700.2.p 5 RVLCKFFMH-GACLKGEYCEFSHD 27 78***8888.*************5 PP | |||||||
2 | zf-CCCH | 28.1 | 3.6e-09 | 35 | 55 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C f+++ G C+yG+rC++ H+ Pavir.4NG219700.2.p 35 VCTFYQK-GACSYGSRCRYDHV 55 5******.*************7 PP | |||||||
3 | zf-CCCH | 19.3 | 2e-06 | 151 | 172 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 ++C+ fa+ G C+yG+ C+ +Hg Pavir.4NG219700.2.p 151 PICS-FAAAGNCPYGEGCPQMHG 172 6788.*****************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 13.77 | 2 | 29 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.97E-7 | 3 | 27 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 4.9E-5 | 3 | 28 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.939 | 30 | 57 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0011 | 31 | 56 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 5.23E-5 | 32 | 54 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.7E-4 | 35 | 54 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 9.5E-7 | 35 | 55 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.343 | 147 | 174 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.016 | 148 | 173 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF57850 | 1.21E-11 | 204 | 280 | No hit | No description |
Gene3D | G3DSA:3.30.40.10 | 6.7E-9 | 209 | 275 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
CDD | cd00162 | 0.00218 | 215 | 275 | No hit | No description |
Pfam | PF00097 | 3.7E-6 | 216 | 273 | IPR018957 | Zinc finger, C3HC4 RING-type |
SMART | SM00184 | 3.2E-6 | 216 | 273 | IPR001841 | Zinc finger, RING-type |
PROSITE profile | PS50089 | 11.929 | 216 | 274 | IPR001841 | Zinc finger, RING-type |
PROSITE pattern | PS00518 | 0 | 240 | 249 | IPR017907 | Zinc finger, RING-type, conserved site |
SMART | SM00356 | 0.011 | 303 | 331 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.676 | 303 | 332 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 369 aa Download sequence Send to blast |
MSTNRVLCKF FMHGACLKGE YCEFSHDWKD QVNNVCTFYQ KGACSYGSRC RYDHVKVSRN 60 PTVPLPSPSS STARPSSTYL QLSSSGHPPR TGHQTDSKNQ RNQISVDVPA HSASKPAWRN 120 DFQHVVSEDG IDWSSNQTLQ NQTSLKPADL PICSFAAAGN CPYGEGCPQM HGDLCSTCGK 180 MCLHPYRPDE REEHIKLCEK NHKRLESLKR SQEIECSVCL DCVLSKPTAA ERKFGLLSEC 240 DHPFCIACIR NWRSNSPASG MDVNSALRAC PICRKLSYYV IPSVLWYFSK EEKEEIIESY 300 KSKLKSIDCK YFDFGTGSCP FGTSCFYRHA YRDGRLEEVV LRHLDADDGS TVIAKNIRLS 360 DFLSRMHL* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 205 | 210 | ESLKRS |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Pvr.1094 | 0.0 | callus| leaf| root |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed in dry seeds. Increased expression throughout imbibition and germination and when radicle and shoots are emerging. Up-regulated during cell differentiation. {ECO:0000269|PubMed:17870591}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in primary roots and leaves. Detected in vascular bundle tissues. {ECO:0000269|PubMed:17870591}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | E3 ubiquitin ligase catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins. {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Pavir.4NG219700.2.p |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | BT065629 | 0.0 | BT065629.1 Zea mays full-length cDNA clone ZM_BFb0371O01 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004965338.1 | 0.0 | E3 ubiquitin-protein ligase makorin | ||||
Swissprot | Q5ZA07 | 0.0 | C3H41_ORYSJ; E3 ubiquitin-protein ligase makorin | ||||
TrEMBL | K3XXQ2 | 0.0 | K3XXQ2_SETIT; Uncharacterized protein | ||||
STRING | Pavir.J40916.1.p | 0.0 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G08505.2 | 1e-137 | C3H family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Pavir.4NG219700.2.p |
Publications ? help Back to Top | |||
---|---|---|---|
|