PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.4NG171700.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | WRKY | ||||||||
Protein Properties | Length: 325aa MW: 35354.1 Da PI: 9.8303 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 94.9 | 5.7e-30 | 179 | 238 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dgy+WrKYGqK+ k++++pr+Y+rC++a Cpvkkkv+rsaed+++++ tYegeHnh Pavir.4NG171700.1.p 179 VKDGYQWRKYGQKVTKDNPCPRAYFRCSFApACPVKKKVQRSAEDKTILVATYEGEHNHG 238 58***************************99****************************5 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 26.142 | 174 | 240 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.01E-25 | 178 | 240 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 2.7E-29 | 178 | 240 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.0E-34 | 179 | 239 | IPR003657 | WRKY domain |
Pfam | PF03106 | 8.7E-25 | 180 | 237 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0002237 | Biological Process | response to molecule of bacterial origin | ||||
GO:0009611 | Biological Process | response to wounding | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0050691 | Biological Process | regulation of defense response to virus by host | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 325 aa Download sequence Send to blast |
MDPWIGGQPS LSLDLNVGLP TARPVAPAAK VLVEENFLAV KKEREQVEAL EAELRRVGEE 60 NKRLSEMLRA LVAKYTELQG QVNDMVAAGN NRQSSTSEGG SAASPPRKRI RSDSLDTAGG 120 GHHRKPSPPF AIPVHDQMEC SSAAVAVFHE PGRRIREECK PKVSRRYVHA DPADLSLVVK 180 DGYQWRKYGQ KVTKDNPCPR AYFRCSFAPA CPVKKKVQRS AEDKTILVAT YEGEHNHGQP 240 PQHDGKGAKP AAASEAVRPA PLPLQQQKQQ QQQRHEAAAA GPSEVVRKNL AEHMAATLTR 300 DPGFKAALAS ALSGRILELS PTRD* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 8e-22 | 178 | 241 | 13 | 75 | WRKY transcription factor 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.1489 | 9e-78 | leaf| root |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription repressor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (PubMed:23462973). Regulates, probably indirectly, the activation of defense-related genes during defense response (By similarity). Modulates plant innate immunity against X.oryzae pv. oryzae (Xoo) (PubMed:21961049). Regulates negatively the basal defense responses to the compatible fungus M.oryzae (PubMed:23462973, PubMed:21726398). {ECO:0000250|UniProtKB:Q6QHD1, ECO:0000269|PubMed:21726398, ECO:0000269|PubMed:21961049, ECO:0000269|PubMed:23462973}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00251 | DAP | Transfer from AT1G80840 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.4NG171700.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by biotic elicitors (e.g. fungal chitin oligosaccharide) (PubMed:23462973). Accumulates in response to M.oryzae (PubMed:21726398). {ECO:0000269|PubMed:21726398, ECO:0000269|PubMed:23462973}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ728369 | 1e-164 | KJ728369.1 Zea mays clone pUT6651 WRKY transcription factor (WRKY124) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025810564.1 | 0.0 | WRKY transcription factor WRKY28-like isoform X2 | ||||
Swissprot | Q0DAJ3 | 1e-142 | WRK28_ORYSJ; WRKY transcription factor WRKY28 | ||||
TrEMBL | A0A3L6PH63 | 0.0 | A0A3L6PH63_PANMI; Putative WRKY transcription factor 60 | ||||
STRING | Pavir.J39636.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1822 | 38 | 103 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G80840.1 | 2e-59 | WRKY DNA-binding protein 40 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.4NG171700.1.p |