PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.4NG131700.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 226aa MW: 24865.9 Da PI: 6.4065 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 81.1 | 7.2e-26 | 10 | 59 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 rien rqvtfskRr g++KKAeEL vLCda+va+i++s tgkl ++s Pavir.4NG131700.1.p 10 RIENAAARQVTFSKRRRGLFKKAEELAVLCDADVALIVISATGKLSQFAS 59 8*********************************************9986 PP | |||||||
2 | K-box | 59.3 | 1.6e-20 | 89 | 171 | 16 | 98 |
K-box 16 slqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 q +++ L++++ + r +R++ Ge+Le Ls++eL+q+e++Le +l ++ s+K++l+++qi+elq+k +l++en+ L+k++ Pavir.4NG131700.1.p 89 VEQSKYSGLNEQLTEASRGLRQMRGEELEGLSVEELHQMERKLEAGLHRVLSTKDQLFMQQISELQQKGAQLEDENRLLKKQV 171 45778888899999999***************************************************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 27.375 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.0E-33 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.2E-22 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.83E-28 | 3 | 75 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.5E-24 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 4.45E-32 | 13 | 75 | No hit | No description |
PRINTS | PR00404 | 1.2E-22 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.2E-22 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 12.86 | 87 | 177 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 1.1E-19 | 91 | 171 | IPR002487 | Transcription factor, K-box |
Gene3D | G3DSA:1.20.5.490 | 8.7E-4 | 148 | 171 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 226 aa Download sequence Send to blast |
MARERRAIRR IENAAARQVT FSKRRRGLFK KAEELAVLCD ADVALIVISA TGKLSQFASS 60 SMNDIIDKYS THSKNLGKSH QQPSIDLNVE QSKYSGLNEQ LTEASRGLRQ MRGEELEGLS 120 VEELHQMERK LEAGLHRVLS TKDQLFMQQI SELQQKGAQL EDENRLLKKQ VPHVITAGAA 180 VVAADTENVL TEDGQSSESV MTALHSGSSH DNDDGSDISL KLSLP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 3e-18 | 1 | 73 | 1 | 73 | MEF2C |
5f28_B | 3e-18 | 1 | 73 | 1 | 73 | MEF2C |
5f28_C | 3e-18 | 1 | 73 | 1 | 73 | MEF2C |
5f28_D | 3e-18 | 1 | 73 | 1 | 73 | MEF2C |
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Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.12314 | 0.0 | leaf| stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed in the L1 cell layer of the embryo 2 days after pollination. {ECO:0000269|PubMed:15682279}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in palea and stamen primordia. {ECO:0000269|PubMed:15682279}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, shoots and developing panicles. {ECO:0000269|PubMed:14701936, ECO:0000269|PubMed:15682279}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. | |||||
UniProt | Probable transcription factor. May be required for spikelet (rice flower) development. {ECO:0000269|PubMed:15682279}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.4NG131700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AJ430635 | 0.0 | AJ430635.1 Zea mays partial mRNA for putative MADS-domain transcription factor (m21 gene). |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025812968.1 | 1e-149 | MADS-box transcription factor 55-like | ||||
Swissprot | Q69TG5 | 1e-112 | MAD55_ORYSJ; MADS-box transcription factor 55 | ||||
Swissprot | Q9XJ66 | 1e-112 | MAD22_ORYSJ; MADS-box transcription factor 22 | ||||
TrEMBL | A0A2T8JDX2 | 1e-147 | A0A2T8JDX2_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Db01833.1.p | 1e-163 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1221 | 36 | 97 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22540.1 | 5e-51 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.4NG131700.1.p |
Publications ? help Back to Top | |||
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