PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.4NG094200.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 279aa    MW: 29669.2 Da    PI: 7.76
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.4NG094200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.82.2e-09192236655
                          HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          n + ++RR+ri +++  L+el+P+       K++ +++L kA+ Y+k +q
  Pavir.4NG094200.1.p 192 NLAAKNRRERITKRLRALQELVPNG-----SKVDTVTMLDKAITYVKFMQ 236
                          8889********************5.....5****************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.869186235IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-12186244IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.23E-14187247IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.01E-13188240No hitNo description
SMARTSM003537.5E-13192241IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.5E-7192236IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MDMVCDPTPN LYYDEAFIDD VGHTGFEHEN LLHHPQQQHH PWELPMAGNP GRSSGTFALD  60
GGWANMAGVS LSSPSSSSVV TFDGHGGEYC AAWTDGLDQL INYDLAPPGH AAASAVASNS  120
FSIGGGRDVT AAAASQKRPR ASAPSQGAEQ EAAAAAAPPP PPKKQSGGHY RRAATKPRKA  180
LPTATAPKEP QNLAAKNRRE RITKRLRALQ ELVPNGSKVD TVTMLDKAIT YVKFMQLQLK  240
VLQTDAFWPA PGGEAPRMSQ VKEALDAILQ SPPFSSQR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.4NG094200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8362782e-44CT836278.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA023K08, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025813345.11e-130transcription factor bHLH69-like
TrEMBLA0A2S3HJW01e-128A0A2S3HJW0_9POAL; Uncharacterized protein
STRINGPavir.Db01008.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141238117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66470.12e-41ROOT HAIR DEFECTIVE6