PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.4NG046600.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 375aa    MW: 40001.2 Da    PI: 6.7637
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.4NG046600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY87.89.2e-28127187259
                          --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                          dDg++WrKYGqK++ g++fpr+YYrCt++   gCp++k+v+rs++d  v+++tY geH+++
  Pavir.4NG046600.1.p 127 DDGFSWRKYGQKDILGAKFPRGYYRCTYRaaqGCPATKQVQRSDTDLCVFDVTYLGEHTCH 187
                          8***************************99999**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.7E-27119188IPR003657WRKY domain
PROSITE profilePS5081122.664121184IPR003657WRKY domain
SuperFamilySSF1182906.67E-25125188IPR003657WRKY domain
SMARTSM007742.5E-40126188IPR003657WRKY domain
PfamPF031063.5E-26127187IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0009816Biological Processdefense response to bacterium, incompatible interaction
GO:0010150Biological Processleaf senescence
GO:0010193Biological Processresponse to ozone
GO:0010200Biological Processresponse to chitin
GO:0031347Biological Processregulation of defense response
GO:0042542Biological Processresponse to hydrogen peroxide
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0009507Cellular Componentchloroplast
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MQDGAGAEGG IQLLLTILAD AEEQARQLGE LAEDPRSRAE HYRGAARRLQ GTLGKAVAVA  60
KAVEAAPGSS RGTDRSDSPR SADESSGGTA AVEAPEGHIL RNKRRKGLPR WTAKFRVPDA  120
NLEATPDDGF SWRKYGQKDI LGAKFPRGYY RCTYRAAQGC PATKQVQRSD TDLCVFDVTY  180
LGEHTCHQKQ RHAAAVTAHG RGGSQSPPPP PPSHHEQQDP SMQLVVMGFK DSLKVETEAS  240
LLHQDHDCYD HGPASAPAAM PFSFPSVPPF HHHGGEAPDN NPAAAAFSPP GSSYFSAPPH  300
HCPAVAGSYN VYDYEARPPG ARMGGAQPSE LGEVVSRATG LDYSSLYHHA EAEVDPHLPF  360
PPFGGPSPSH GPYQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B1e-201281841874Disease resistance protein RRS1
5w3x_D1e-201281841874Disease resistance protein RRS1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.4NG046600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025811264.10.0probable WRKY transcription factor 53
TrEMBLA0A3L6PB120.0A0A3L6PB12_PANMI; Uncharacterized protein
STRINGPavir.Da02163.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP133402730
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23810.18e-38WRKY family protein