PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.4NG018400.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | ERF | ||||||||
Protein Properties | Length: 220aa MW: 23491.9 Da PI: 4.8158 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 57.7 | 2.8e-18 | 40 | 91 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + y+GVr++ grWv+e+r+p +k+ r++lg+f tae Aa+a++ a+++l+g Pavir.4NG018400.1.p 40 PVYRGVRRRGPAGRWVCEVREP---NKKSRIWLGTFATAEAAARAHDVAALALRG 91 68****************9998...347*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 8.7E-14 | 40 | 91 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.1E-30 | 41 | 101 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.42E-20 | 41 | 101 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.7E-25 | 41 | 105 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.313 | 41 | 99 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.1E-5 | 42 | 53 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.1E-5 | 65 | 81 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 220 aa Download sequence Send to blast |
MEYDEQESPE AAAGEEYATV MSAPPKRPAG RTKFRETRHP VYRGVRRRGP AGRWVCEVRE 60 PNKKSRIWLG TFATAEAAAR AHDVAALALR GRAACLNFAD SARLLRVDPA TLATPEDIRR 120 AAIELAEASA QQDAAAAVAS SSSAADAAAP MAMHHQQDAA PYDYAAMYGN MDFDQPYYYD 180 GMGCGAVGGN DWQAGWHVDA DDDGAGAAGC GSDMTLWNY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 4e-14 | 39 | 98 | 12 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.1787 | 0.0 | stem |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}. | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.4NG018400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY785898 | 1e-142 | AY785898.1 Sorghum bicolor SbCBF5 (CBF5) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025813816.1 | 1e-94 | dehydration-responsive element-binding protein 1C-like | ||||
Swissprot | A2Y8S6 | 1e-70 | DRE1C_ORYSI; Dehydration-responsive element-binding protein 1C | ||||
Swissprot | Q9LWV3 | 1e-70 | DRE1C_ORYSJ; Dehydration-responsive element-binding protein 1C | ||||
TrEMBL | A0A1E5W5R3 | 1e-100 | A0A1E5W5R3_9POAL; Peroxisomal membrane protein 11-5 | ||||
STRING | Pavir.J35991.1.p | 3e-94 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP196 | 36 | 261 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G25480.1 | 8e-33 | dehydration response element B1A |
Link Out ? help Back to Top | |
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Phytozome | Pavir.4NG018400.1.p |
Publications ? help Back to Top | |||
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