PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.4NG008900.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | B3 | ||||||||
Protein Properties | Length: 192aa MW: 20783.6 Da PI: 5.078 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 37 | 6e-12 | 68 | 147 | 1 | 86 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 f +v+++s v k+ +lv+p + + e + l +grsW ++ + k ++ + +GW++F+ +n L++gD +vF+l+ Pavir.4NG008900.2.p 68 FTTVMSKSQVQKQFQLVIPARLQRLLP---EARVPAALL-CRGRSWAASYCGDLKCKK--IDAGWRDFAVDNALRVGDACVFELIT 147 8899***************99874442...223334444.48********66555555..9**********************875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 9.5E-17 | 62 | 169 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.55E-14 | 64 | 146 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.94E-14 | 66 | 169 | No hit | No description |
Pfam | PF02362 | 4.9E-10 | 68 | 147 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.42 | 68 | 171 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 0.002 | 68 | 171 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 192 aa Download sequence Send to blast |
METRTPGFPW KKQQQQPDPD GFPKLELEPP HAGGKPKVEP CEEQEHSPPA APDDDWEVTP 60 LSGGHPFFTT VMSKSQVQKQ FQLVIPARLQ RLLPEARVPA ALLCRGRSWA ASYCGDLKCK 120 KIDAGWRDFA VDNALRVGDA CVFELITAPA ATGSSAASSE VVFRVQVLRG GLPEEITSKG 180 ATPDEPLVIV D* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.4NG008900.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025811196.1 | 8e-99 | B3 domain-containing protein Os06g0112300-like isoform X1 | ||||
Swissprot | Q9LHY9 | 1e-46 | Y6112_ORYSJ; B3 domain-containing protein Os06g0112300 | ||||
TrEMBL | A0A3L6PEL1 | 3e-97 | A0A3L6PEL1_PANMI; B3 domain-containing protein | ||||
STRING | Pavir.Db02470.1.p | 1e-137 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G58280.1 | 4e-06 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.4NG008900.2.p |
Publications ? help Back to Top | |||
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