PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.4KG368700.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family G2-like
Protein Properties Length: 270aa    MW: 29679 Da    PI: 8.9142
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.4KG368700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like97.31.1e-304396255
              G2-like  2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                         pr+rWt+eLH++Fveave LGG+++AtPk+il+lm+vkg++++h+kSHLQ+YR+
  Pavir.4KG368700.1.p 43 PRMRWTEELHRQFVEAVECLGGQDEATPKRILQLMGVKGVSISHIKSHLQMYRS 96
                         8****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.3923999IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.1E-293997IPR009057Homeodomain-like
SuperFamilySSF466891.2E-164398IPR009057Homeodomain-like
TIGRFAMsTIGR015572.3E-244396IPR006447Myb domain, plants
PfamPF002497.3E-94495IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MQLAGRELNS SGEEGAVGRR EAAGRMRGFE RKGVRQYNRS EVPRMRWTEE LHRQFVEAVE  60
CLGGQDEATP KRILQLMGVK GVSISHIKSH LQMYRSSSNS SSAHQSSLQK STSSSNRKRV  120
FLNREDHCAY ASPDGNTVAS DKNIYAALLH GCSQWSPYQI PSLQEVFRSW EQSRGRIPGN  180
SNVLTIEKAA VKPSHTASNR RPDEKQTGCD LTLSIGLWED ASSDADGSST ISEELRATAA  240
GSRRVATVKE EESKPALNLD LTISSSWLA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A1e-174497457Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B1e-174497457Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A1e-174497457Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C1e-174497457Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D1e-174497457Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F1e-174497457Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H1e-174497457Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J1e-174497457Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.4KG368700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU4067634e-85CU406763.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C005B16, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025810426.11e-156probable transcription factor KAN3
TrEMBLA0A3L6S1V11e-156A0A3L6S1V1_PANMI; Uncharacterized protein
STRINGPavir.Da00200.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP54933758
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02060.18e-28G2-like family protein