PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.4KG333800.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB
Protein Properties Length: 310aa    MW: 32606.6 Da    PI: 8.7139
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.4KG333800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding60.63.4e-191156147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                         rg+W++eEd+ l ++v+++G ++W++I r+++ gR++k+c++rw + 
  Pavir.4KG333800.1.p 11 RGPWSPEEDDALRRLVERHGARNWTAIGREIP-GRSGKSCRLRWCNQ 56
                         89******************************.***********985 PP
2Myb_DNA-binding55.11.7e-1763105145
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                          r ++T+eEd  +v+a+++lG++ W++Iar ++ gRt++ +k++w+
  Pavir.4KG333800.1.p  63 RRPFTAEEDAAIVRAHARLGNR-WAAIARLLP-GRTDNAVKNHWN 105
                          679*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.62661IPR017930Myb domain
SuperFamilySSF466893.56E-318104IPR009057Homeodomain-like
SMARTSM007175.3E-171059IPR001005SANT/Myb domain
PfamPF002491.5E-181156IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.1E-251264IPR009057Homeodomain-like
CDDcd001673.10E-161355No hitNo description
SMARTSM007175.3E-1662110IPR001005SANT/Myb domain
PfamPF002498.7E-1563105IPR001005SANT/Myb domain
PROSITE profilePS5129420.28663112IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.1E-2365112IPR009057Homeodomain-like
CDDcd001671.33E-1265105No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MGAVAECDRI RGPWSPEEDD ALRRLVERHG ARNWTAIGRE IPGRSGKSCR LRWCNQLSPQ  60
VERRPFTAEE DAAIVRAHAR LGNRWAAIAR LLPGRTDNAV KNHWNCSLKR KLAAAAAAGG  120
AGSDGAELEA RPSKRQSLSP DTPSSGSGTV SDRSDLSHGA GSGSGQVFRP VPRSGGFEPA  180
DCAMSRPAED DDPLTSLSLS LPGTDQRFHH DRAHSQFQEL PASPPPPSPS PPPPPPAPSA  240
PAAAAYPFSP DFMAAMQELI RAEVQRYMAG AGVRAGCGPA GGAGLCMPQL VEGIMRAAAE  300
RVGAVARIK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A8e-4081124108B-MYB
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.45380.0callus| root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.4KG333800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHF6794291e-163HF679429.1 Saccharum hybrid cultivar Co 86032 mRNA for ScMYB23 protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004965791.11e-172transcription factor MYB44
TrEMBLK3XYD01e-171K3XYD0_SETIT; Uncharacterized protein
STRINGPavir.Da00404.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP78938154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67300.11e-60myb domain protein r1