PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.4KG254300.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | bHLH | ||||||||
Protein Properties | Length: 385aa MW: 40536.9 Da PI: 5.8105 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 42.3 | 1.3e-13 | 119 | 169 | 2 | 55 |
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++h +Er+RR+++N+ ++ Lr+l+P + k+ + a+i +v+YIk+Lq Pavir.4KG254300.1.p 119 KTSHITVERNRRKQMNEHLAVLRSLMPCF---YVKRGDQASIIGGVVDYIKELQ 169 799*************************9...9********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.44E-17 | 116 | 193 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.49E-14 | 117 | 173 | No hit | No description |
PROSITE profile | PS50888 | 14.818 | 117 | 168 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 6.8E-11 | 119 | 169 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 5.9E-14 | 119 | 181 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.6E-11 | 123 | 174 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS51671 | 8.696 | 318 | 384 | IPR002912 | ACT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008152 | Biological Process | metabolic process | ||||
GO:0016597 | Molecular Function | amino acid binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 385 aa Download sequence Send to blast |
MAEALCDQLF SDVDGELMMM QHPSDADDLL GSILEAWEDC VTGGGGATPR SAEPEVPQAT 60 DSTARASPPK PAAGNVRRMG DRDDDATVPE APKRQRCSPA MSSSEAAATS DDGAANNNKT 120 SHITVERNRR KQMNEHLAVL RSLMPCFYVK RGDQASIIGG VVDYIKELQQ VLQSLEAKKQ 180 RKAYTDQVLS PRPPLPPLKS TPPISPRPSV PISPRTPPPG PGSLYKVRMQ PPLPLPLSPP 240 GSAYASPART PTREPSPASS SSYLPSLDKI AAELCAYAAG TSKQPQRPAL LPAAAAGGGG 300 GAALLPDVRV EFSGANLVVK TVSHRAPGQA VKVIAALEGR SLEILDAKIS TVDDTAVNSF 360 TIKIGIECEL SAEELVQEIQ QAFS* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.17940 | 0.0 | stem |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.4KG254300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FP093390 | 2e-87 | FP093390.1 Phyllostachys edulis cDNA clone: bphyem213c13, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025813040.1 | 0.0 | transcription factor SPEECHLESS-like | ||||
TrEMBL | A0A2T7DY22 | 0.0 | A0A2T7DY22_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Da00918.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3484 | 35 | 77 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G53210.1 | 3e-37 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.4KG254300.1.p |