PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.4KG248800.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB
Protein Properties Length: 319aa    MW: 33470.3 Da    PI: 6.4286
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.4KG248800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.61.1e-161461148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g+WT+eEd +l+ +   +G+g+W+ ++++ g++R++k+c++r+ +yl
  Pavir.4KG248800.1.p 14 KGPWTPEEDAKLLAYTSTHGTGNWTNVPQRAGLKRCGKSCRLRYTNYL 61
                         79********************************************97 PP
2Myb_DNA-binding51.81.9e-1669110346
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          ++T+eE++l+v ++++lG++ W++Ia+ ++ gRt++++k++w++
  Pavir.4KG248800.1.p  69 NFTQEEEDLIVTLHAMLGSR-WSLIANQLP-GRTDNDVKNYWNT 110
                          89******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.8E-24565IPR009057Homeodomain-like
PROSITE profilePS5129417.415961IPR017930Myb domain
SuperFamilySSF466892.42E-3011108IPR009057Homeodomain-like
SMARTSM007172.4E-141363IPR001005SANT/Myb domain
PfamPF002491.6E-151461IPR001005SANT/Myb domain
CDDcd001673.64E-111661No hitNo description
PROSITE profilePS5129424.53262116IPR017930Myb domain
SMARTSM007178.5E-1566114IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.6E-2366116IPR009057Homeodomain-like
PfamPF002496.8E-1569110IPR001005SANT/Myb domain
CDDcd001676.95E-1269112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MGRPPCCDKA NVKKGPWTPE EDAKLLAYTS THGTGNWTNV PQRAGLKRCG KSCRLRYTNY  60
LRPNLKHENF TQEEEDLIVT LHAMLGSRWS LIANQLPGRT DNDVKNYWNT KLSKKLRQRG  120
IDPITHRPIA DLMHSIGALA IRPPQPAHSP NGGSSSSSYL PGPAALPLVH DVAYHAAGIL  180
QPPPLPPPQQ QQQAVIARVD ADAPASPAAD HGQQLKWSDF LADDAAAAAA ASEAQQVLGQ  240
YHHEAGGSGV LAAGSSSAGG GRGCGDGGGG DDGAAAFIDA ILDCDKETGV DQLIAELLAD  300
PAYYAGSSSS SSEMGWGC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-26141167108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.4KG248800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9670890.0EU967089.1 Zea mays clone 299414 DNA binding protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001150470.11e-168uncharacterized protein LOC100284100
TrEMBLA0A3L6S2K31e-175A0A3L6S2K3_PANMI; DNA binding protein
STRINGPavir.Db01456.1.p1e-178(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118743439
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56110.16e-67myb domain protein 103