PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.4KG242300.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | G2-like | ||||||||
Protein Properties | Length: 463aa MW: 50039.6 Da PI: 5.0875 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 87.6 | 1.2e-27 | 184 | 238 | 1 | 56 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k++++WtpeLH+rFv+aveqL G++kA+P++ile+m++++Lt+++++SHLQkYR++ Pavir.4KG242300.1.p 184 KAKVDWTPELHRRFVQAVEQL-GIDKAVPSRILEIMGIDSLTRHNIASHLQKYRSH 238 6799*****************.********************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.924 | 181 | 240 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.3E-27 | 182 | 241 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 7.17E-19 | 182 | 241 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.7E-26 | 184 | 238 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 6.4E-8 | 187 | 236 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010638 | Biological Process | positive regulation of organelle organization | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 463 aa Download sequence Send to blast |
MLVVAVSSPV RCADVEECRG SAVMEMEEIG PVSDDLDFNF TVDEIDFGDF FLRLEDGDAL 60 PDLEVDPGEI FTDFEAITTG SDGVMDQEVP SVQPLADAVQ LDAVDPCSSV LGEENTTLVD 120 VEEEKGEYYC NHAEDVVAGT NGNFGGGGGT VLAEEKSPSS TTSSSREAES RHKSTTKHSQ 180 GKKKAKVDWT PELHRRFVQA VEQLGIDKAV PSRILEIMGI DSLTRHNIAS HLQKYRSHRK 240 HMLAREAEAA SWTQRRQMYA AGGAPAAAKR PDYSNAWTVP TIGFPPPPPL PPPPHPMQHF 300 GRPLHVWGHP TPGVESPRVP MWPRHLVPRA STPPWAPPPS DPAFWHHPYM RGPAHMPGQV 360 APCVAVPMPA ARFPAPPVRG VLPCPPPMYR PLVPPALGSK SQQDTQLQLQ IQPSSESIDA 420 AIGDVLSKPW LPLPLGLKPP SVDSVMGELQ RQGVADVPPA CG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 6e-17 | 181 | 236 | 2 | 57 | ARR10-B |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.12051 | 0.0 | leaf| stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in leaves. {ECO:0000269|PubMed:11340194}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional activator that promotes chloroplast development. Acts as an activator of nuclear photosynthetic genes involved in chlorophyll biosynthesis, light harvesting, and electron transport. {ECO:0000269|PubMed:19808806}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.4KG242300.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By light. {ECO:0000269|PubMed:11340194}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025812542.1 | 0.0 | probable transcription factor GLK1 | ||||
Swissprot | Q5Z5I4 | 1e-173 | GLK1_ORYSJ; Probable transcription factor GLK1 | ||||
TrEMBL | A0A3L6PCE1 | 0.0 | A0A3L6PCE1_PANMI; Putative transcription factor GLK1 | ||||
STRING | Pavir.Db01285.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2415 | 38 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G20570.1 | 2e-54 | GBF's pro-rich region-interacting factor 1 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.4KG242300.1.p |
Publications ? help Back to Top | |||
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