PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.4KG214400.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 264aa    MW: 28824.4 Da    PI: 4.855
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.4KG214400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM63.75.7e-20441631128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                          lp+Gf F P+d ++v +yL +++ g++l+l+  i + d +++ Pw+L ++ ++ +++ +fF+  + ++ +g+r++r ++       g+  
  Pavir.4KG214400.1.p  44 LPQGFLFAPEDGDVVEQYLLRRILGQPLPLDGLILDDDPLSAPPWELLAR-NGCKDDAFFFALGQARSGKGSRQKRDMR-------GQRL 125
                          799***************************999**************733.4456689******************866.......7778 PP

                  NAM  91 evlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                          +vl    + e+ + kk L f +g ++   +t+Wvmhey++
  Pavir.4KG214400.1.p 126 RVLGPggGAEDAWRKKALSFQEGGQKG--STEWVMHEYAI 163
                          888776567779*********887766..8********86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.35E-2540182IPR003441NAC domain
PROSITE profilePS5100521.45144182IPR003441NAC domain
PfamPF023651.3E-1145162IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MTDGLILEDD PLSAPPWELL ERNGRKEEAF FLAEGQARCR ALGLPQGFLF APEDGDVVEQ  60
YLLRRILGQP LPLDGLILDD DPLSAPPWEL LARNGCKDDA FFFALGQARS GKGSRQKRDM  120
RGQRLRVLGP GGGAEDAWRK KALSFQEGGQ KGSTEWVMHE YAITAPDHLA ESQMRLYRIR  180
FSGHGKKRKR GEADSLAEEA APAAARRRAV DDALLDISTS QPSCPSSSMM MVEHADGNCP  240
TDEDQLAAPV SIPANQDLNP GGST
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1184190GKKRKRG
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.4KG214400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025813463.11e-115uncharacterized protein LOC112890817
TrEMBLA0A2T7E0R61e-113A0A2T7E0R6_9POAL; Uncharacterized protein
STRINGPavir.Db01755.1.p1e-124(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP80222137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02250.13e-09NAC domain containing protein 5