PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.4KG203500.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

bZIP

Protein Properties

Length: 344aa MW: 36694.9 Da PI: 9.699

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.4KG203500.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	50.5	4.5e-16	263	316	5	57
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH.HHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLk.keleelkkeva 57 +r+rr++kNRe+A rsR+RK+a+i eLe +v++L+++N++L+ k++e+lkk+ + Pavir.4KG203500.1.p 263 RRQRRMIKNRESAARSRARKQAYIMELEAEVAKLKEQNDELQkKQVEMLKKQKD 316 79**************************************96156888888765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.7E-13	259	324	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.082	261	306	IPR004827	Basic-leucine zipper domain
CDD	cd14707	2.07E-27	263	317	No hit	No description
SuperFamily	SSF57959	3.87E-11	263	309	No hit	No description
Gene3D	G3DSA:1.20.5.170	2.8E-15	263	317	No hit	No description
Pfam	PF00170	2.7E-13	263	317	IPR004827	Basic-leucine zipper domain
PROSITE pattern	PS00036	0	266	281	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 344 aa Download sequence Send to blast
MEMPGGSGGP ALARQGSIYS LTFDEFQSAL GGAGKDFGSM NMDELLRNIW TAEESNAMAA 60 AAAPTAAVDA HAQQQQQQPG APIQRQGSFT LPRTLSQKTV DEVWREIVGL TGGEDVQPVP 120 PPAPAAAAAA APAPMQAQAQ AQAQRQPTLG SMTLEEFLVR AGVVREDMAQ QTLVLPPHAQ 180 AFFSQGNAVA PQTLQLGNGM VAGVVGQGLG GAMTVAAPTT PVVLNGMGKV EAGDLSSLSP 240 VPYPFDTALR VRKGPTVEKV VERRQRRMIK NRESAARSRA RKQAYIMELE AEVAKLKEQN 300 DELQKKQVEM LKKQKDEVLE RISNQLGPKA KKLCLRRTLT GPW*

Sequence ? help Back to Top

Protein Sequence Length: 344 aa Download sequence Send to blast

MEMPGGSGGP ALARQGSIYS LTFDEFQSAL GGAGKDFGSM NMDELLRNIW TAEESNAMAA  60
AAAPTAAVDA HAQQQQQQPG APIQRQGSFT LPRTLSQKTV DEVWREIVGL TGGEDVQPVP  120
PPAPAAAAAA APAPMQAQAQ AQAQRQPTLG SMTLEEFLVR AGVVREDMAQ QTLVLPPHAQ  180
AFFSQGNAVA PQTLQLGNGM VAGVVGQGLG GAMTVAAPTT PVVLNGMGKV EAGDLSSLSP  240
VPYPFDTALR VRKGPTVEKV VERRQRRMIK NRESAARSRA RKQAYIMELE AEVAKLKEQN  300
DELQKKQVEM LKKQKDEVLE RISNQLGPKA KKLCLRRTLT GPW*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots, shoots, leaves, flag leaves, stems, flowers and panicles (PubMed:20576316). Widely expressed (PubMed:21546455). {ECO:0000269\|PubMed:20576316, ECO:0000269\|PubMed:21546455}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in abscisic acid (ABA) signaling pathway (PubMed:20576316, PubMed:19947981, PubMed:21546455, PubMed:22301130, PubMed:26300907, PubMed:27468891). Transcription factor activity is fully activated by ABA (PubMed:19947981, PubMed:26300907, PubMed:27468891). Acts as positive regulator of the expression of abiotic stress-responsive genes through an ABA-dependent signaling pathway (PubMed:20576316). Acts as positive regulator of ABA signaling and drought stress tolerance (PubMed:22301130). Plays an important role in ABA and auxin responses. Involved in ABA signaling and stress responses by directly binding to the ABA-responsive element (ABRE)-containing genes, especially WRKY family genes. Modulates response to auxin. Suppresses auxin signaling by targeting ABRE-containing genes related to auxin metabolism or signaling (PubMed:21546455). {ECO:0000269\|PubMed:19947981, ECO:0000269\|PubMed:20576316, ECO:0000269\|PubMed:21546455, ECO:0000269\|PubMed:22301130, ECO:0000269\|PubMed:26300907, ECO:0000269\|PubMed:27468891}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.4KG203500.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by abscisic acid (ABA) (PubMed:20576316, PubMed:18315698, PubMed:21546455, PubMed:22301130). Induced by auxin (PubMed:21546455, PubMed:22301130). Induced by gibberellin (PubMed:21546455). Induced by salt and drought stresses (PubMed:20576316, PubMed:21546455, PubMed:22301130). Induced by cold stress (PubMed:20576316). Induced by oxidative stress (PubMed:20576316, PubMed:22301130). {ECO:0000269\|PubMed:18315698, ECO:0000269\|PubMed:20576316, ECO:0000269\|PubMed:21546455, ECO:0000269\|PubMed:22301130}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU961736	0.0	EU961736.1 Zea mays clone 237973 mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025813315.1	0.0	bZIP transcription factor 46-like
Swissprot	Q69TW5	1e-142	BZP46_ORYSJ; bZIP transcription factor 46
TrEMBL	A0A3L6S319	0.0	A0A3L6S319_PANMI; ABSCISIC ACID-INSENSITIVE 5-like protein 5
STRING	Pavir.Da01931.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP706	38	147

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G45249.1	8e-43	abscisic acid responsive elements-binding factor 2

Link Out ? help Back to Top
Phytozome	Pavir.4KG203500.1.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Hossain MA, et al. The ABRE-binding bZIP transcription factor OsABF2 is a positive regulator of abiotic stress and ABA signaling in rice. J. Plant Physiol., 2010. 167(17): p. 1512-20 [PMID:20576316] Yang X, et al. Rice ABI5-Like1 regulates abscisic acid and auxin responses by affecting the expression of ABRE-containing genes. Plant Physiol., 2011. 156(3): p. 1397-409 [PMID:21546455] Li YS, et al. A novel nuclear protein phosphatase 2C negatively regulated by ABL1 is involved in abiotic stress and panicle development in rice. Mol. Biotechnol., 2013. 54(2): p. 703-10 [PMID:23086454] Guo C,Ge X,Ma H The rice OsDIL gene plays a role in drought tolerance at vegetative and reproductive stages. Plant Mol. Biol., 2013. 82(3): p. 239-53 [PMID:23686450] Huang X, et al. OsSLI1, a homeodomain containing transcription activator, involves abscisic acid related stress response in rice (Oryza sativa L.). ScientificWorldJournal, 2014. 2014: p. 809353 [PMID:25089296] Kim N, et al. Functional characterization and reconstitution of ABA signaling components using transient gene expression in rice protoplasts. Front Plant Sci, 2015. 6: p. 614 [PMID:26300907] Chen H, et al. Characterization of OsPM19L1 encoding an AWPM-19-like family protein that is dramatically induced by osmotic stress in rice. Genet. Mol. Res., 2015. 14(4): p. 11994-2005 [PMID:26505346] Tang N, et al. MODD Mediates Deactivation and Degradation of OsbZIP46 to Negatively Regulate ABA Signaling and Drought Resistance in Rice. Plant Cell, 2016. 28(9): p. 2161-2177 [PMID:27468891]