PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.4KG164200.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family FAR1
Protein Properties Length: 327aa    MW: 37447.4 Da    PI: 8.2207
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.4KG164200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR128.45.3e-0975138262
                 FAR1   2 fYneYAkevGFsvrkskskks...krngeitkrtfvCskegkreeekkktekerrtraetrtgC 62 
                          f+++Y+  +GF+v++++  ++   k+n+ei+k++++C ++gk+++++++ e + +t   +  gC
  Pavir.4KG164200.1.p  75 FFSFYGFLAGFEVVVAHVARTsakKKNNEIYKQEMKCHRYGKQSKKEEQIELADETLLREAKGC 138
                          9**************9998887889999******************999665555555555555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.7E-775137IPR004330FAR1 DNA binding domain
PROSITE profilePS509668.531128166IPR007527Zinc finger, SWIM-type
SMARTSM005752.1E-6141168IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MKTLGSNAGK EFNGSDENKN EAELNGSQEL TEEEVEEFIR KEKQAASEGN NVDIDSKYTS  60
QIGMEFKDRD AAHHFFSFYG FLAGFEVVVA HVARTSAKKK NNEIYKQEMK CHRYGKQSKK  120
EEQIELADET LLREAKGCEE FSCICGKFNK DGILCAHILK VIVEEEINKI SEKYFIDRWR  180
KKEKKFHIPK DIDGNATHEL LRFNMLSRKA ALLTSKGAKT KEGMQYLDEE FERLNKHLDF  240
LLEEKERQTT LVITEQSEIH HDDGGSISNN VGEIVILQDP KRIQQKGRPK NPTRLKPLVE  300
QERAKMAKAA AKKNKKQQQT SSKPHV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.4KG164200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021311831.13e-54protein FAR1-RELATED SEQUENCE 5
STRINGPavir.Ia02283.1.p1e-120(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1502635
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52520.12e-08FAR1-related sequence 6