PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.4KG156200.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB
Protein Properties Length: 296aa    MW: 32997.8 Da    PI: 9.8386
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.4KG156200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding506.8e-162774148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         rg+WT++Ed +lv+ v+++G ++W+ Ia+  g+ R++k+c++rw +yl
  Pavir.4KG156200.1.p 27 RGPWTEQEDMQLVCTVNLFGDRRWDFIAQVSGLYRSGKSCRLRWVNYL 74
                         89********************************************97 PP
2Myb_DNA-binding47.54.3e-1581125248
                          SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          gr+++eE+ l +++++++ ++ W++Iar+++ g+t++++k++w++++
  Pavir.4KG156200.1.p  81 GRMSPEEENLVIKLHARWVNR-WSRIARYLP-GLTDNEIKNYWRTHM 125
                          89*******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.6352274IPR017930Myb domain
SuperFamilySSF466891.95E-2625121IPR009057Homeodomain-like
SMARTSM007176.6E-142676IPR001005SANT/Myb domain
PfamPF002498.9E-152774IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.7E-182881IPR009057Homeodomain-like
CDDcd001671.70E-112974No hitNo description
PROSITE profilePS5129422.90575129IPR017930Myb domain
SMARTSM007171.1E-1279127IPR001005SANT/Myb domain
PfamPF002491.1E-1281124IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.7E-2082128IPR009057Homeodomain-like
CDDcd001676.44E-1182125No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MLPSPSLSTV GTGSANNMVT MRAEMRRGPW TEQEDMQLVC TVNLFGDRRW DFIAQVSGLY  60
RSGKSCRLRW VNYLHPGLKH GRMSPEEENL VIKLHARWVN RWSRIARYLP GLTDNEIKNY  120
WRTHMRKKAQ ERKMSLSPST SPCSPTTYQS CLLLDTSPNS WIGSGDSHNA SSCTTSALWM  180
TETITDGFPM DLILKDVETP QAPAYLGIDE GKMKHSAAFP ALHPQPLPQS LALPCALGTR  240
QRRKVTLQNV CSVQHMTNSS WQRAAGKVGF AVCPFSGTRQ TLPCAGFDAR QNKVA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A2e-24241291105MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.4KG156200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004980031.11e-101myb-related protein MYBAS1
SwissprotQ53NK65e-93MYBA1_ORYSJ; Myb-related protein MYBAS1
TrEMBLK3ZJP92e-99K3ZJP9_SETIT; Uncharacterized protein
STRINGPavir.J11826.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63637169
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59780.32e-62myb domain protein 59
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]