PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.4KG135900.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB_related
Protein Properties Length: 567aa    MW: 65087.5 Da    PI: 9.547
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.4KG135900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding223.7e-07357398347
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          +WT+eE ++  + v++ G+  Wk  a  +g  +++ ++k+ w+  
  Pavir.4KG135900.1.p 357 KWTEEEYKIVRRFVEKNGTS-WKELATDLG--KSEIHVKDTWRRM 398
                          8*****************99.********8..9*******99975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.59281352IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.5E-5283345IPR009057Homeodomain-like
PROSITE profilePS500904.821284350IPR017877Myb-like domain
SuperFamilySSF466893.04E-8330411IPR009057Homeodomain-like
PROSITE profilePS512949.13352403IPR017930Myb domain
SMARTSM007170.036354401IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.6E-9357408IPR009057Homeodomain-like
PfamPF139212.1E-9358416No hitNo description
PROSITE profilePS500908.223400468IPR017877Myb-like domain
SMARTSM007170.0028404470IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.2E-9409469IPR009057Homeodomain-like
SuperFamilySSF466893.96E-8448526IPR009057Homeodomain-like
PROSITE profilePS500907.979470523IPR017877Myb-like domain
SMARTSM0071715474525IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 567 aa     Download sequence    Send to blast
MERDSAADYS EVKAVLGSNE EKKAHKSKKD KGQRKRKKDK AKGHRGDGDR LIQSDNKNHS  60
VDMKHAEVST KMAEKPCLEN TEVIMSKRDV KKDRKKRKKN KEVNTISQKQ ILDANDGTVG  120
SEYLEMNKGE GEHDSKSKKG KRKHRDGETS SNGSSHDQIV SGGDKKRKRK EPSITLEEGN  180
EVDISKIWQN TKGKKKRRKE RDNIGVDLSL NTPAGDCKNY NKEKKTSKDD NDGGKCGKIN  240
MAHQKDKGRR VSFTDDVEVF NIDGGDDHEE GDGIGDSGLV HGKRFTPEED AKLMEAIVYY  300
AEMKQLGDKG LEMIRASMKH PEIRGCWAEI ATSLPHRPQM AVYKRARILL YRSAERKWTE  360
EEYKIVRRFV EKNGTSWKEL ATDLGKSEIH VKDTWRRMKP KNLKKGAWTQ DEYQNLFDLV  420
NLDLRVKAHQ KIAPSHRQLR DNISWEAISE KLTTRSNKDC CLKWYQQLAS PLVKEGIWAD  480
TDDYLLMEAL QKVDAVCVED VDWERLLDHR SGELCRQRWN QMVRMIGGHR EKPFIEQVEV  540
LARRYCPEML DYRKAESSDE LTGGSD*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12935DKGQRKR
23338RKRKKD
33339RKRKKDK
49098KKDRKKRKK
59498KKRKK
6164169KKRKRK
7193197KKKRR
8193198KKKRRK
9194198KKRRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.19790.0callus| leaf| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.4KG135900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025811598.10.0RNA polymerase I termination factor-like isoform X1
RefseqXP_025811599.10.0RNA polymerase I termination factor-like isoform X2
RefseqXP_025811600.10.0RNA polymerase I termination factor-like isoform X2
TrEMBLA0A2S3HM590.0A0A2S3HM59_9POAL; Uncharacterized protein
STRINGPavir.Da01599.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP54052635
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41020.15e-94MYB_related family protein